Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4306 and GFF4307 are separated by 100 nucleotides GFF4307 and GFF4308 are separated by 202 nucleotides GFF4308 and GFF4309 are separated by 6 nucleotides
GFF4306 - hypothetical protein, at 85,922 to 87,628
GFF4306
GFF4307 - hypothetical protein, at 87,729 to 88,640
GFF4307
GFF4308 - Molybdopterin adenylyltransferase, at 88,843 to 89,376
GFF4308
GFF4309 - Ferrous-iron efflux pump FieF, at 89,383 to 90,273
GFF4309
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 86.900 kb on + strand, within GFF4306 at 86.900 kb on + strand, within GFF4306 at 86.900 kb on + strand, within GFF4306 at 87.078 kb on - strand, within GFF4306 at 87.225 kb on - strand, within GFF4306 at 87.225 kb on - strand, within GFF4306 at 87.294 kb on - strand, within GFF4306 at 87.380 kb on + strand, within GFF4306 at 87.381 kb on - strand, within GFF4306 at 87.540 kb on - strand at 87.640 kb on + strand at 88.576 kb on + strand at 88.576 kb on + strand at 88.577 kb on - strand at 88.577 kb on - strand at 88.577 kb on - strand at 88.630 kb on + strand at 88.704 kb on - strand at 88.789 kb on + strand at 88.789 kb on + strand at 88.789 kb on + strand at 88.790 kb on - strand at 88.900 kb on + strand, within GFF4308 at 88.900 kb on + strand, within GFF4308 at 88.900 kb on + strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 88.901 kb on - strand, within GFF4308 at 89.297 kb on - strand, within GFF4308 at 89.297 kb on - strand, within GFF4308 at 89.384 kb on + strand at 89.385 kb on - strand at 89.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 86,900 + GFF4306 0.57 +0.2 86,900 + GFF4306 0.57 -0.4 86,900 + GFF4306 0.57 +0.5 87,078 - GFF4306 0.68 -0.2 87,225 - GFF4306 0.76 +0.4 87,225 - GFF4306 0.76 +0.0 87,294 - GFF4306 0.80 -1.0 87,380 + GFF4306 0.85 -0.7 87,381 - GFF4306 0.85 +0.5 87,540 - +0.0 87,640 + -0.8 88,576 + +0.3 88,576 + -0.7 88,577 - -0.3 88,577 - -0.2 88,577 - -0.6 88,630 + +0.0 88,704 - +1.6 88,789 + +0.4 88,789 + -0.5 88,789 + -2.0 88,790 - +1.1 88,900 + GFF4308 0.11 +0.2 88,900 + GFF4308 0.11 +0.0 88,900 + GFF4308 0.11 -0.7 88,901 - GFF4308 0.11 +0.6 88,901 - GFF4308 0.11 +0.3 88,901 - GFF4308 0.11 -0.1 88,901 - GFF4308 0.11 -0.8 89,297 - GFF4308 0.85 +0.5 89,297 - GFF4308 0.85 -0.2 89,384 + +0.2 89,385 - +0.7 89,385 - +0.1
Or see this region's nucleotide sequence