Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4256 and GFF4257 are separated by 127 nucleotides GFF4257 and GFF4258 are separated by 96 nucleotides GFF4258 and GFF4259 are separated by 60 nucleotides GFF4259 and GFF4260 are separated by 9 nucleotides
GFF4256 - Chaperone protein DnaJ, at 26,416 to 27,366
GFF4256
GFF4257 - hypothetical protein, at 27,494 to 27,901
GFF4257
GFF4258 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 27,998 to 28,639
GFF4258
GFF4259 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 28,700 to 29,449
GFF4259
GFF4260 - Magnesium transport protein CorA, at 29,459 to 30,433
GFF4260
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.177 kb on - strand, within GFF4256 at 27.353 kb on + strand at 27.606 kb on + strand, within GFF4257 at 27.938 kb on - strand at 27.938 kb on - strand at 27.939 kb on + strand at 27.940 kb on - strand at 28.035 kb on + strand at 28.036 kb on - strand at 28.189 kb on + strand, within GFF4258 at 28.189 kb on + strand, within GFF4258 at 28.190 kb on - strand, within GFF4258 at 28.361 kb on + strand, within GFF4258 at 28.476 kb on - strand, within GFF4258 at 28.631 kb on + strand at 28.632 kb on - strand at 28.675 kb on + strand at 28.778 kb on - strand, within GFF4259 at 29.025 kb on - strand, within GFF4259 at 29.181 kb on - strand, within GFF4259 at 29.181 kb on - strand, within GFF4259 at 29.312 kb on + strand, within GFF4259 at 29.375 kb on + strand at 29.375 kb on + strand at 29.375 kb on + strand at 29.376 kb on - strand at 29.402 kb on + strand at 29.402 kb on + strand at 29.403 kb on - strand at 29.403 kb on - strand at 29.460 kb on + strand at 29.461 kb on - strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 27,177 - GFF4256 0.80 +1.1 27,353 + -0.1 27,606 + GFF4257 0.27 -0.1 27,938 - +0.7 27,938 - +0.4 27,939 + +0.1 27,940 - -0.6 28,035 + +0.2 28,036 - -0.4 28,189 + GFF4258 0.30 +0.6 28,189 + GFF4258 0.30 -0.5 28,190 - GFF4258 0.30 -2.6 28,361 + GFF4258 0.57 -1.0 28,476 - GFF4258 0.74 -2.0 28,631 + -3.0 28,632 - +0.7 28,675 + -0.2 28,778 - GFF4259 0.10 +0.1 29,025 - GFF4259 0.43 +0.0 29,181 - GFF4259 0.64 -0.3 29,181 - GFF4259 0.64 +0.1 29,312 + GFF4259 0.82 +0.0 29,375 + +0.0 29,375 + -0.7 29,375 + +0.7 29,376 - +1.6 29,402 + -0.2 29,402 + -0.0 29,403 - -0.6 29,403 - -0.4 29,460 + +0.3 29,461 - -0.6 29,541 + -0.3 29,541 + -0.2 29,541 + -0.7 29,541 + -0.0 29,541 + +0.6 29,541 + -1.0 29,541 + +0.3 29,542 - -0.0 29,542 - -0.3 29,542 - -0.0 29,542 - +0.3 29,542 - -0.6 29,542 - +0.4 29,542 - -0.2 29,542 - -0.4 29,542 - -2.4
Or see this region's nucleotide sequence