Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4232 and GFF4233 overlap by 1 nucleotides GFF4233 and GFF4234 are separated by 68 nucleotides GFF4234 and GFF4235 are separated by 223 nucleotides GFF4235 and GFF4236 are separated by 87 nucleotides
GFF4232 - Putative aliphatic sulfonates transport permease protein SsuC, at 4,972 to 5,853
GFF4232
GFF4233 - Aliphatic sulfonates import ATP-binding protein SsuB, at 5,853 to 6,668
GFF4233
GFF4234 - hypothetical protein, at 6,737 to 7,606
GFF4234
GFF4235 - hypothetical protein, at 7,830 to 8,207
GFF4235
GFF4236 - Nitrate import ATP-binding protein NrtD, at 8,295 to 9,116
GFF4236
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 5.749 kb on + strand, within GFF4232 at 5.825 kb on - strand at 5.924 kb on + strand at 6.491 kb on + strand, within GFF4233 at 6.492 kb on - strand, within GFF4233 at 6.510 kb on + strand, within GFF4233 at 6.873 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.020 kb on + strand, within GFF4234 at 7.021 kb on - strand, within GFF4234 at 7.021 kb on - strand, within GFF4234 at 7.021 kb on - strand, within GFF4234 at 7.021 kb on - strand, within GFF4234 at 7.041 kb on + strand, within GFF4234 at 7.042 kb on - strand, within GFF4234 at 7.042 kb on - strand, within GFF4234 at 7.174 kb on + strand, within GFF4234 at 7.175 kb on - strand, within GFF4234 at 7.305 kb on + strand, within GFF4234 at 7.305 kb on + strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.306 kb on - strand, within GFF4234 at 7.728 kb on - strand at 7.728 kb on - strand at 7.770 kb on + strand at 7.826 kb on + strand at 7.964 kb on + strand, within GFF4235 at 8.175 kb on + strand at 8.175 kb on + strand at 8.175 kb on + strand at 8.176 kb on - strand at 8.199 kb on + strand at 8.200 kb on - strand at 8.200 kb on - strand at 8.397 kb on - strand, within GFF4236
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 5,749 + GFF4232 0.88 -0.3 5,825 - -0.8 5,924 + -0.6 6,491 + GFF4233 0.78 +0.0 6,492 - GFF4233 0.78 -1.1 6,510 + GFF4233 0.81 -0.2 6,873 + GFF4234 0.16 -0.8 7,020 + GFF4234 0.33 +0.9 7,020 + GFF4234 0.33 -0.4 7,020 + GFF4234 0.33 -0.5 7,020 + GFF4234 0.33 -0.9 7,020 + GFF4234 0.33 +0.1 7,020 + GFF4234 0.33 -1.0 7,021 - GFF4234 0.33 -0.6 7,021 - GFF4234 0.33 +0.3 7,021 - GFF4234 0.33 -0.4 7,021 - GFF4234 0.33 -1.1 7,041 + GFF4234 0.35 +0.9 7,042 - GFF4234 0.35 -0.4 7,042 - GFF4234 0.35 +0.6 7,174 + GFF4234 0.50 +0.5 7,175 - GFF4234 0.50 -0.3 7,305 + GFF4234 0.65 -0.3 7,305 + GFF4234 0.65 +1.0 7,306 - GFF4234 0.65 -0.8 7,306 - GFF4234 0.65 +0.2 7,306 - GFF4234 0.65 -0.4 7,306 - GFF4234 0.65 -0.6 7,306 - GFF4234 0.65 +0.3 7,306 - GFF4234 0.65 +0.6 7,306 - GFF4234 0.65 -1.8 7,728 - -0.1 7,728 - -2.0 7,770 + -0.1 7,826 + +0.1 7,964 + GFF4235 0.35 +0.7 8,175 + -0.5 8,175 + -0.2 8,175 + -0.5 8,176 - -1.5 8,199 + +0.0 8,200 - -0.4 8,200 - +0.1 8,397 - GFF4236 0.12 -1.7
Or see this region's nucleotide sequence