Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4198 and GFF4199 overlap by 4 nucleotides GFF4199 and GFF4200 are separated by 60 nucleotides GFF4200 and GFF4201 are separated by 19 nucleotides
GFF4198 - hypothetical protein, at 218,299 to 218,607
GFF4198
GFF4199 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 218,604 to 219,323
GFF4199
GFF4200 - hypothetical protein, at 219,384 to 220,418
GFF4200
GFF4201 - 3-oxoadipate enol-lactonase 2, at 220,438 to 221,235
GFF4201
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.459 kb on - strand, within GFF4198 at 218.519 kb on - strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.588 kb on - strand at 218.725 kb on + strand, within GFF4199 at 218.891 kb on - strand, within GFF4199 at 219.264 kb on - strand at 219.474 kb on - strand at 219.569 kb on - strand, within GFF4200 at 219.569 kb on - strand, within GFF4200 at 219.708 kb on + strand, within GFF4200 at 219.708 kb on + strand, within GFF4200 at 219.708 kb on + strand, within GFF4200 at 219.708 kb on + strand, within GFF4200 at 219.709 kb on - strand, within GFF4200 at 219.709 kb on - strand, within GFF4200 at 219.709 kb on - strand, within GFF4200 at 219.709 kb on - strand, within GFF4200 at 219.786 kb on + strand, within GFF4200 at 219.786 kb on + strand, within GFF4200 at 219.787 kb on - strand, within GFF4200 at 219.787 kb on - strand, within GFF4200 at 219.789 kb on + strand, within GFF4200 at 219.789 kb on + strand, within GFF4200 at 219.790 kb on - strand, within GFF4200 at 219.790 kb on - strand, within GFF4200 at 219.967 kb on - strand, within GFF4200 at 220.035 kb on + strand, within GFF4200 at 220.036 kb on - strand, within GFF4200 at 220.036 kb on - strand, within GFF4200 at 220.038 kb on - strand, within GFF4200 at 220.185 kb on + strand, within GFF4200 at 220.185 kb on + strand, within GFF4200 at 220.185 kb on + strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.186 kb on - strand, within GFF4200 at 220.192 kb on + strand, within GFF4200 at 220.192 kb on + strand, within GFF4200 at 220.193 kb on - strand, within GFF4200 at 220.655 kb on - strand, within GFF4201 at 220.993 kb on + strand, within GFF4201 at 220.993 kb on + strand, within GFF4201 at 220.993 kb on + strand, within GFF4201 at 220.994 kb on - strand, within GFF4201
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 218,458 + GFF4198 0.51 +0.2 218,458 + GFF4198 0.51 +0.3 218,458 + GFF4198 0.51 +0.1 218,459 - GFF4198 0.52 +1.0 218,519 - GFF4198 0.71 +0.8 218,569 + GFF4198 0.87 +0.5 218,569 + GFF4198 0.87 -0.3 218,569 + GFF4198 0.87 +0.6 218,588 - +0.4 218,725 + GFF4199 0.17 -0.5 218,891 - GFF4199 0.40 -0.4 219,264 - -1.6 219,474 - -0.8 219,569 - GFF4200 0.18 +0.1 219,569 - GFF4200 0.18 +0.5 219,708 + GFF4200 0.31 -0.8 219,708 + GFF4200 0.31 +0.9 219,708 + GFF4200 0.31 -0.7 219,708 + GFF4200 0.31 -1.9 219,709 - GFF4200 0.31 +0.3 219,709 - GFF4200 0.31 -0.6 219,709 - GFF4200 0.31 +0.6 219,709 - GFF4200 0.31 -0.0 219,786 + GFF4200 0.39 +0.0 219,786 + GFF4200 0.39 -0.0 219,787 - GFF4200 0.39 -0.3 219,787 - GFF4200 0.39 +0.1 219,789 + GFF4200 0.39 -0.1 219,789 + GFF4200 0.39 -0.1 219,790 - GFF4200 0.39 -1.7 219,790 - GFF4200 0.39 +1.6 219,967 - GFF4200 0.56 -0.1 220,035 + GFF4200 0.63 -0.1 220,036 - GFF4200 0.63 -0.5 220,036 - GFF4200 0.63 +1.0 220,038 - GFF4200 0.63 -0.3 220,185 + GFF4200 0.77 -0.2 220,185 + GFF4200 0.77 +0.2 220,185 + GFF4200 0.77 +1.0 220,186 - GFF4200 0.77 +0.1 220,186 - GFF4200 0.77 -0.4 220,186 - GFF4200 0.77 -0.2 220,186 - GFF4200 0.77 -0.9 220,186 - GFF4200 0.77 +0.6 220,186 - GFF4200 0.77 -0.9 220,192 + GFF4200 0.78 -0.5 220,192 + GFF4200 0.78 -1.3 220,193 - GFF4200 0.78 -0.4 220,655 - GFF4201 0.27 -0.0 220,993 + GFF4201 0.70 +1.6 220,993 + GFF4201 0.70 +0.3 220,993 + GFF4201 0.70 -0.2 220,994 - GFF4201 0.70 -0.1
Or see this region's nucleotide sequence