Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4174 and GFF4175 are separated by 52 nucleotides GFF4175 and GFF4176 are separated by 117 nucleotides
GFF4174 - Sialic acid-binding periplasmic protein SiaP, at 188,594 to 189,625
GFF4174
GFF4175 - Oligo-1,6-glucosidase, at 189,678 to 191,303
GFF4175
GFF4176 - hypothetical protein, at 191,421 to 192,392
GFF4176
Position (kb) 189
190
191
192 Strain fitness (log2 ratio) -1
0
1 at 188.711 kb on + strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174 at 189.572 kb on + strand at 189.573 kb on - strand at 189.573 kb on - strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.875 kb on - strand, within GFF4175 at 190.207 kb on + strand, within GFF4175 at 190.208 kb on - strand, within GFF4175 at 190.208 kb on - strand, within GFF4175 at 190.450 kb on + strand, within GFF4175 at 190.450 kb on + strand, within GFF4175 at 190.451 kb on - strand, within GFF4175 at 190.477 kb on + strand, within GFF4175 at 190.572 kb on - strand, within GFF4175 at 190.573 kb on + strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.792 kb on + strand, within GFF4175 at 190.793 kb on - strand, within GFF4175 at 190.793 kb on - strand, within GFF4175 at 190.793 kb on - strand, within GFF4175 at 190.796 kb on - strand, within GFF4175 at 190.796 kb on - strand, within GFF4175 at 190.799 kb on - strand, within GFF4175 at 190.819 kb on + strand, within GFF4175 at 190.819 kb on + strand, within GFF4175 at 190.820 kb on - strand, within GFF4175 at 190.820 kb on - strand, within GFF4175 at 190.820 kb on - strand, within GFF4175 at 190.897 kb on + strand, within GFF4175 at 190.897 kb on + strand, within GFF4175 at 190.898 kb on - strand, within GFF4175 at 190.898 kb on - strand, within GFF4175 at 191.072 kb on - strand, within GFF4175 at 191.072 kb on - strand, within GFF4175 at 191.087 kb on - strand, within GFF4175 at 191.113 kb on + strand, within GFF4175 at 191.113 kb on + strand, within GFF4175 at 191.114 kb on - strand, within GFF4175 at 191.114 kb on - strand, within GFF4175 at 191.158 kb on + strand at 191.159 kb on - strand at 191.231 kb on - strand at 191.231 kb on - strand at 191.239 kb on + strand at 191.361 kb on + strand at 191.362 kb on - strand at 191.488 kb on + strand at 191.728 kb on + strand, within GFF4176 at 191.728 kb on + strand, within GFF4176 at 191.828 kb on + strand, within GFF4176 at 191.906 kb on - strand, within GFF4176
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 188,711 + GFF4174 0.11 -0.0 188,718 - GFF4174 0.12 +0.2 188,718 - GFF4174 0.12 +0.1 189,008 + GFF4174 0.40 -0.4 189,008 + GFF4174 0.40 -0.5 189,008 + GFF4174 0.40 +0.5 189,009 - GFF4174 0.40 +0.2 189,009 - GFF4174 0.40 +0.1 189,009 - GFF4174 0.40 +0.2 189,009 - GFF4174 0.40 +0.9 189,219 - GFF4174 0.61 +0.1 189,219 - GFF4174 0.61 -0.6 189,572 + -0.7 189,573 - -0.0 189,573 - +0.2 189,605 + +0.3 189,605 + -0.2 189,605 + -0.9 189,725 + +0.0 189,725 + +0.9 189,874 + GFF4175 0.12 +0.4 189,874 + GFF4175 0.12 +0.2 189,874 + GFF4175 0.12 -0.2 189,874 + GFF4175 0.12 +0.4 189,875 - GFF4175 0.12 -0.1 190,207 + GFF4175 0.33 -0.6 190,208 - GFF4175 0.33 +0.3 190,208 - GFF4175 0.33 -0.2 190,450 + GFF4175 0.47 -0.4 190,450 + GFF4175 0.47 +0.1 190,451 - GFF4175 0.48 +0.9 190,477 + GFF4175 0.49 +0.3 190,572 - GFF4175 0.55 +0.6 190,573 + GFF4175 0.55 -1.1 190,574 - GFF4175 0.55 -0.6 190,574 - GFF4175 0.55 +0.7 190,574 - GFF4175 0.55 +0.1 190,574 - GFF4175 0.55 -0.8 190,792 + GFF4175 0.69 -0.1 190,793 - GFF4175 0.69 -0.2 190,793 - GFF4175 0.69 +1.0 190,793 - GFF4175 0.69 +0.8 190,796 - GFF4175 0.69 +0.1 190,796 - GFF4175 0.69 +0.0 190,799 - GFF4175 0.69 -0.5 190,819 + GFF4175 0.70 -0.9 190,819 + GFF4175 0.70 -0.7 190,820 - GFF4175 0.70 -0.2 190,820 - GFF4175 0.70 -1.0 190,820 - GFF4175 0.70 +0.6 190,897 + GFF4175 0.75 +0.2 190,897 + GFF4175 0.75 -0.1 190,898 - GFF4175 0.75 -0.9 190,898 - GFF4175 0.75 +0.4 191,072 - GFF4175 0.86 -0.4 191,072 - GFF4175 0.86 -0.1 191,087 - GFF4175 0.87 +0.4 191,113 + GFF4175 0.88 -0.3 191,113 + GFF4175 0.88 +0.5 191,114 - GFF4175 0.88 +1.5 191,114 - GFF4175 0.88 -0.8 191,158 + -0.1 191,159 - +1.0 191,231 - +0.4 191,231 - +0.0 191,239 + -0.4 191,361 + -0.3 191,362 - -0.6 191,488 + -0.7 191,728 + GFF4176 0.32 -0.4 191,728 + GFF4176 0.32 -0.0 191,828 + GFF4176 0.42 +0.3 191,906 - GFF4176 0.50 -1.0
Or see this region's nucleotide sequence