Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4163 and GFF4164 are separated by 16 nucleotides GFF4164 and GFF4165 are separated by 85 nucleotides
GFF4163 - Ferrochelatase, at 176,538 to 177,596
GFF4163
GFF4164 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 177,613 to 178,542
GFF4164
GFF4165 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 178,628 to 179,401
GFF4165
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 177.594 kb on + strand at 177.614 kb on + strand at 177.614 kb on + strand at 177.615 kb on - strand at 177.615 kb on - strand at 177.615 kb on - strand at 177.615 kb on - strand at 177.656 kb on - strand at 177.818 kb on + strand, within GFF4164 at 177.819 kb on - strand, within GFF4164 at 177.819 kb on - strand, within GFF4164 at 177.819 kb on - strand, within GFF4164 at 177.938 kb on - strand, within GFF4164 at 177.980 kb on + strand, within GFF4164 at 177.980 kb on + strand, within GFF4164 at 177.981 kb on - strand, within GFF4164 at 178.418 kb on + strand, within GFF4164 at 178.418 kb on + strand, within GFF4164 at 178.418 kb on + strand, within GFF4164 at 178.418 kb on + strand, within GFF4164 at 178.419 kb on - strand, within GFF4164 at 178.419 kb on - strand, within GFF4164 at 178.419 kb on - strand, within GFF4164 at 178.731 kb on + strand, within GFF4165 at 178.732 kb on - strand, within GFF4165 at 178.732 kb on - strand, within GFF4165 at 178.779 kb on + strand, within GFF4165 at 178.779 kb on + strand, within GFF4165 at 178.779 kb on + strand, within GFF4165 at 178.779 kb on + strand, within GFF4165 at 178.780 kb on - strand, within GFF4165 at 178.780 kb on - strand, within GFF4165 at 178.962 kb on + strand, within GFF4165 at 178.962 kb on + strand, within GFF4165 at 179.154 kb on + strand, within GFF4165 at 179.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 177,594 + -0.6 177,614 + -0.2 177,614 + +0.3 177,615 - -0.1 177,615 - +0.5 177,615 - +0.4 177,615 - -1.0 177,656 - -0.1 177,818 + GFF4164 0.22 -0.3 177,819 - GFF4164 0.22 +0.5 177,819 - GFF4164 0.22 -0.5 177,819 - GFF4164 0.22 +0.3 177,938 - GFF4164 0.35 +0.3 177,980 + GFF4164 0.39 -1.1 177,980 + GFF4164 0.39 +0.4 177,981 - GFF4164 0.40 +0.3 178,418 + GFF4164 0.87 -1.3 178,418 + GFF4164 0.87 -0.1 178,418 + GFF4164 0.87 -0.2 178,418 + GFF4164 0.87 +0.9 178,419 - GFF4164 0.87 +0.5 178,419 - GFF4164 0.87 +1.1 178,419 - GFF4164 0.87 +0.3 178,731 + GFF4165 0.13 -0.3 178,732 - GFF4165 0.13 -1.9 178,732 - GFF4165 0.13 -0.5 178,779 + GFF4165 0.20 -0.4 178,779 + GFF4165 0.20 +0.7 178,779 + GFF4165 0.20 -0.7 178,779 + GFF4165 0.20 -0.2 178,780 - GFF4165 0.20 -0.2 178,780 - GFF4165 0.20 -0.0 178,962 + GFF4165 0.43 +0.9 178,962 + GFF4165 0.43 -0.5 179,154 + GFF4165 0.68 +0.2 179,432 - +1.0
Or see this region's nucleotide sequence