Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4161 and GFF4162 are separated by 190 nucleotides GFF4162 and GFF4163 are separated by 339 nucleotides
GFF4161 - hypothetical protein, at 174,758 to 175,645
GFF4161
GFF4162 - Response regulator receiver protein CpdR, at 175,836 to 176,198
GFF4162
GFF4163 - Ferrochelatase, at 176,538 to 177,596
GFF4163
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1 at 173.800 kb on - strand at 173.823 kb on + strand at 173.867 kb on - strand at 173.928 kb on - strand at 173.928 kb on - strand at 174.157 kb on + strand at 174.561 kb on + strand at 174.676 kb on + strand at 174.889 kb on - strand, within GFF4161 at 174.955 kb on + strand, within GFF4161 at 174.956 kb on - strand, within GFF4161 at 174.958 kb on + strand, within GFF4161 at 174.958 kb on + strand, within GFF4161 at 174.958 kb on + strand, within GFF4161 at 174.959 kb on - strand, within GFF4161 at 174.960 kb on + strand, within GFF4161 at 175.054 kb on + strand, within GFF4161 at 175.055 kb on - strand, within GFF4161 at 175.198 kb on - strand, within GFF4161 at 175.206 kb on + strand, within GFF4161 at 175.206 kb on + strand, within GFF4161 at 175.207 kb on - strand, within GFF4161 at 175.207 kb on - strand, within GFF4161 at 175.207 kb on - strand, within GFF4161 at 175.207 kb on - strand, within GFF4161 at 175.209 kb on + strand, within GFF4161 at 175.477 kb on + strand, within GFF4161 at 175.477 kb on + strand, within GFF4161 at 175.539 kb on + strand, within GFF4161 at 175.544 kb on - strand, within GFF4161 at 175.780 kb on + strand at 175.780 kb on + strand at 176.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 173,800 - -0.2 173,823 + -0.4 173,867 - -0.9 173,928 - +0.6 173,928 - -1.0 174,157 + +0.0 174,561 + +1.2 174,676 + +0.8 174,889 - GFF4161 0.15 -0.5 174,955 + GFF4161 0.22 -0.7 174,956 - GFF4161 0.22 -0.8 174,958 + GFF4161 0.23 -0.5 174,958 + GFF4161 0.23 -0.2 174,958 + GFF4161 0.23 +0.9 174,959 - GFF4161 0.23 -1.3 174,960 + GFF4161 0.23 +0.6 175,054 + GFF4161 0.33 -0.9 175,055 - GFF4161 0.33 -1.0 175,198 - GFF4161 0.50 +0.2 175,206 + GFF4161 0.50 -0.6 175,206 + GFF4161 0.50 -0.0 175,207 - GFF4161 0.51 -0.2 175,207 - GFF4161 0.51 -0.4 175,207 - GFF4161 0.51 -0.6 175,207 - GFF4161 0.51 -0.8 175,209 + GFF4161 0.51 -0.4 175,477 + GFF4161 0.81 -0.5 175,477 + GFF4161 0.81 -1.4 175,539 + GFF4161 0.88 +0.2 175,544 - GFF4161 0.89 -0.7 175,780 + +0.3 175,780 + +1.0 176,463 - +0.5
Or see this region's nucleotide sequence