Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4154 and GFF4155 are separated by 3 nucleotides GFF4155 and GFF4156 are separated by 60 nucleotides GFF4156 and GFF4157 are separated by 187 nucleotides GFF4157 and GFF4158 are separated by 265 nucleotides
GFF4154 - hypothetical protein, at 167,846 to 168,931
GFF4154
GFF4155 - hypothetical protein, at 168,935 to 169,216
GFF4155
GFF4156 - Glyoxylate/hydroxypyruvate reductase B, at 169,277 to 170,263
GFF4156
GFF4157 - Small heat shock protein IbpA, at 170,451 to 170,936
GFF4157
GFF4158 - hypothetical protein, at 171,202 to 171,714
GFF4158
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 168.414 kb on - strand, within GFF4154 at 168.414 kb on - strand, within GFF4154 at 168.414 kb on - strand, within GFF4154 at 168.756 kb on - strand, within GFF4154 at 168.837 kb on + strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.839 kb on + strand at 168.839 kb on + strand at 168.840 kb on - strand at 169.010 kb on + strand, within GFF4155 at 169.010 kb on + strand, within GFF4155 at 169.010 kb on + strand, within GFF4155 at 169.191 kb on + strand at 169.192 kb on - strand at 169.192 kb on - strand at 169.692 kb on + strand, within GFF4156 at 169.693 kb on - strand, within GFF4156 at 170.007 kb on + strand, within GFF4156 at 170.203 kb on - strand at 170.794 kb on + strand, within GFF4157 at 170.824 kb on + strand, within GFF4157 at 170.824 kb on + strand, within GFF4157 at 170.825 kb on - strand, within GFF4157 at 170.825 kb on - strand, within GFF4157 at 170.930 kb on + strand at 170.930 kb on + strand at 170.930 kb on + strand at 170.941 kb on + strand at 170.941 kb on + strand at 170.942 kb on - strand at 170.942 kb on - strand at 170.942 kb on - strand at 170.974 kb on + strand at 170.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 168,414 - GFF4154 0.52 -0.4 168,414 - GFF4154 0.52 -1.0 168,414 - GFF4154 0.52 -0.1 168,756 - GFF4154 0.84 +1.0 168,837 + -0.8 168,838 - -0.4 168,838 - -1.3 168,838 - -0.2 168,838 - -0.8 168,839 + -2.1 168,839 + +0.9 168,840 - -0.2 169,010 + GFF4155 0.27 -0.7 169,010 + GFF4155 0.27 -1.2 169,010 + GFF4155 0.27 +0.0 169,191 + -1.6 169,192 - -0.7 169,192 - +0.0 169,692 + GFF4156 0.42 +0.5 169,693 - GFF4156 0.42 -1.1 170,007 + GFF4156 0.74 -0.8 170,203 - -0.2 170,794 + GFF4157 0.71 +0.5 170,824 + GFF4157 0.77 +0.0 170,824 + GFF4157 0.77 +0.5 170,825 - GFF4157 0.77 -0.1 170,825 - GFF4157 0.77 -0.4 170,930 + +0.6 170,930 + -0.5 170,930 + -0.4 170,941 + -0.4 170,941 + +0.0 170,942 - -0.0 170,942 - -0.3 170,942 - +0.7 170,974 + -0.2 170,975 - -1.2
Or see this region's nucleotide sequence