Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4152 and GFF4153 are separated by 102 nucleotides GFF4153 and GFF4154 are separated by 159 nucleotides GFF4154 and GFF4155 are separated by 3 nucleotides GFF4155 and GFF4156 are separated by 60 nucleotides
GFF4152 - Multidrug resistance protein MdtE, at 165,734 to 166,966
GFF4152
GFF4153 - hypothetical protein, at 167,069 to 167,686
GFF4153
GFF4154 - hypothetical protein, at 167,846 to 168,931
GFF4154
GFF4155 - hypothetical protein, at 168,935 to 169,216
GFF4155
GFF4156 - Glyoxylate/hydroxypyruvate reductase B, at 169,277 to 170,263
GFF4156
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1 at 167.006 kb on - strand at 167.037 kb on + strand at 167.098 kb on + strand at 167.099 kb on - strand at 167.156 kb on - strand, within GFF4153 at 167.410 kb on - strand, within GFF4153 at 167.410 kb on - strand, within GFF4153 at 167.538 kb on + strand, within GFF4153 at 167.538 kb on + strand, within GFF4153 at 167.767 kb on + strand at 167.842 kb on + strand at 167.843 kb on - strand at 167.999 kb on + strand, within GFF4154 at 167.999 kb on + strand, within GFF4154 at 168.159 kb on - strand, within GFF4154 at 168.159 kb on - strand, within GFF4154 at 168.414 kb on - strand, within GFF4154 at 168.414 kb on - strand, within GFF4154 at 168.414 kb on - strand, within GFF4154 at 168.756 kb on - strand, within GFF4154 at 168.837 kb on + strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.838 kb on - strand at 168.839 kb on + strand at 168.839 kb on + strand at 168.840 kb on - strand at 169.010 kb on + strand, within GFF4155 at 169.010 kb on + strand, within GFF4155 at 169.010 kb on + strand, within GFF4155 at 169.191 kb on + strand at 169.192 kb on - strand at 169.192 kb on - strand at 169.692 kb on + strand, within GFF4156 at 169.693 kb on - strand, within GFF4156
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 167,006 - -0.6 167,037 + -0.2 167,098 + +0.4 167,099 - -0.5 167,156 - GFF4153 0.14 +0.0 167,410 - GFF4153 0.55 -0.6 167,410 - GFF4153 0.55 +0.3 167,538 + GFF4153 0.76 -1.4 167,538 + GFF4153 0.76 -0.0 167,767 + -1.4 167,842 + +0.2 167,843 - +0.2 167,999 + GFF4154 0.14 +0.5 167,999 + GFF4154 0.14 -0.1 168,159 - GFF4154 0.29 -1.3 168,159 - GFF4154 0.29 -0.4 168,414 - GFF4154 0.52 -0.4 168,414 - GFF4154 0.52 -1.0 168,414 - GFF4154 0.52 -0.1 168,756 - GFF4154 0.84 +1.0 168,837 + -0.8 168,838 - -0.4 168,838 - -1.3 168,838 - -0.2 168,838 - -0.8 168,839 + -2.1 168,839 + +0.9 168,840 - -0.2 169,010 + GFF4155 0.27 -0.7 169,010 + GFF4155 0.27 -1.2 169,010 + GFF4155 0.27 +0.0 169,191 + -1.6 169,192 - -0.7 169,192 - +0.0 169,692 + GFF4156 0.42 +0.5 169,693 - GFF4156 0.42 -1.1
Or see this region's nucleotide sequence