Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4135 and GFF4136 are separated by 184 nucleotides GFF4136 and GFF4137 are separated by 90 nucleotides
GFF4135 - hypothetical protein, at 140,233 to 140,949
GFF4135
GFF4136 - Phosphoenolpyruvate carboxykinase (ATP), at 141,134 to 142,747
GFF4136
GFF4137 - Transcriptional regulatory protein ros, at 142,838 to 143,251
GFF4137
Position (kb) 141
142
143 Strain fitness (log2 ratio) -1
0
1
2 at 140.590 kb on + strand, within GFF4135 at 140.590 kb on + strand, within GFF4135 at 140.591 kb on - strand, within GFF4135 at 140.758 kb on + strand, within GFF4135 at 141.004 kb on - strand at 141.004 kb on - strand at 141.065 kb on + strand at 141.066 kb on - strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.233 kb on + strand at 141.379 kb on + strand, within GFF4136 at 141.470 kb on + strand, within GFF4136 at 141.471 kb on - strand, within GFF4136 at 141.512 kb on + strand, within GFF4136 at 141.513 kb on - strand, within GFF4136 at 141.514 kb on + strand, within GFF4136 at 141.716 kb on + strand, within GFF4136 at 141.716 kb on + strand, within GFF4136 at 141.717 kb on - strand, within GFF4136 at 141.717 kb on - strand, within GFF4136 at 141.758 kb on + strand, within GFF4136 at 141.758 kb on + strand, within GFF4136 at 141.759 kb on - strand, within GFF4136 at 141.759 kb on - strand, within GFF4136 at 141.953 kb on + strand, within GFF4136 at 141.954 kb on - strand, within GFF4136 at 142.109 kb on + strand, within GFF4136 at 142.110 kb on - strand, within GFF4136 at 142.241 kb on + strand, within GFF4136 at 142.241 kb on + strand, within GFF4136 at 142.241 kb on + strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.242 kb on - strand, within GFF4136 at 142.260 kb on - strand, within GFF4136 at 142.267 kb on + strand, within GFF4136 at 142.542 kb on - strand, within GFF4136 at 142.595 kb on + strand at 142.595 kb on + strand at 142.755 kb on - strand at 142.779 kb on + strand at 142.828 kb on + strand at 142.828 kb on + strand at 142.829 kb on - strand at 142.902 kb on + strand, within GFF4137 at 142.975 kb on - strand, within GFF4137 at 143.190 kb on + strand, within GFF4137 at 143.190 kb on + strand, within GFF4137 at 143.191 kb on - strand, within GFF4137 at 143.191 kb on - strand, within GFF4137 at 143.191 kb on - strand, within GFF4137 at 143.204 kb on - strand, within GFF4137 at 143.469 kb on + strand at 143.487 kb on + strand at 143.487 kb on + strand at 143.487 kb on + strand at 143.488 kb on - strand at 143.488 kb on - strand at 143.488 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.535 kb on + strand at 143.535 kb on + strand at 143.536 kb on - strand at 143.586 kb on + strand at 143.586 kb on + strand at 143.741 kb on - strand at 143.741 kb on - strand at 143.741 kb on - strand at 143.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 140,590 + GFF4135 0.50 +0.9 140,590 + GFF4135 0.50 -0.2 140,591 - GFF4135 0.50 +0.5 140,758 + GFF4135 0.73 -0.7 141,004 - -1.0 141,004 - -0.4 141,065 + -1.4 141,066 - +0.2 141,071 + +0.4 141,071 + -0.1 141,071 + +0.1 141,071 + -0.5 141,071 + -0.2 141,071 + -0.7 141,233 + +0.5 141,379 + GFF4136 0.15 +0.1 141,470 + GFF4136 0.21 -0.2 141,471 - GFF4136 0.21 +0.3 141,512 + GFF4136 0.23 +0.8 141,513 - GFF4136 0.23 +0.4 141,514 + GFF4136 0.24 -0.5 141,716 + GFF4136 0.36 +0.7 141,716 + GFF4136 0.36 -0.1 141,717 - GFF4136 0.36 +1.0 141,717 - GFF4136 0.36 -0.2 141,758 + GFF4136 0.39 -0.2 141,758 + GFF4136 0.39 -0.3 141,759 - GFF4136 0.39 -0.3 141,759 - GFF4136 0.39 -0.7 141,953 + GFF4136 0.51 -0.1 141,954 - GFF4136 0.51 +0.7 142,109 + GFF4136 0.60 +0.5 142,110 - GFF4136 0.60 +0.4 142,241 + GFF4136 0.69 -0.5 142,241 + GFF4136 0.69 +0.5 142,241 + GFF4136 0.69 +0.3 142,242 - GFF4136 0.69 +0.6 142,242 - GFF4136 0.69 +1.0 142,242 - GFF4136 0.69 +0.0 142,242 - GFF4136 0.69 -1.5 142,242 - GFF4136 0.69 +0.4 142,242 - GFF4136 0.69 +0.1 142,260 - GFF4136 0.70 -1.0 142,267 + GFF4136 0.70 -0.3 142,542 - GFF4136 0.87 -0.7 142,595 + +0.7 142,595 + -0.6 142,755 - +0.6 142,779 + +0.5 142,828 + +0.3 142,828 + +0.1 142,829 - +0.1 142,902 + GFF4137 0.15 +0.0 142,975 - GFF4137 0.33 +0.1 143,190 + GFF4137 0.85 +0.5 143,190 + GFF4137 0.85 -0.1 143,191 - GFF4137 0.85 -0.4 143,191 - GFF4137 0.85 +0.0 143,191 - GFF4137 0.85 +0.3 143,204 - GFF4137 0.88 -0.0 143,469 + +0.5 143,487 + -0.2 143,487 + -0.5 143,487 + +0.1 143,488 - +0.4 143,488 - +0.2 143,488 - +0.1 143,534 - -0.6 143,534 - -0.2 143,535 + -0.5 143,535 + +1.8 143,536 - -0.2 143,586 + -0.1 143,586 + +0.1 143,741 - -0.4 143,741 - +1.2 143,741 - -0.0 143,741 - -0.8
Or see this region's nucleotide sequence