Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4072 and GFF4073 are separated by 33 nucleotides GFF4073 and GFF4074 overlap by 8 nucleotides GFF4074 and GFF4075 are separated by 355 nucleotides
GFF4072 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 64,805 to 65,554
GFF4072
GFF4073 - hypothetical protein, at 65,588 to 66,481
GFF4073
GFF4074 - Nitrate import ATP-binding protein NrtD, at 66,474 to 67,244
GFF4074
GFF4075 - HTH-type transcriptional repressor NagR, at 67,600 to 68,397
GFF4075
Position (kb) 66
67
68 Strain fitness (log2 ratio) -1
0
1
2 at 65.534 kb on + strand at 65.535 kb on - strand at 65.535 kb on - strand at 65.576 kb on + strand at 65.576 kb on + strand at 65.577 kb on - strand at 65.577 kb on - strand at 65.700 kb on + strand, within GFF4073 at 65.896 kb on - strand, within GFF4073 at 65.906 kb on + strand, within GFF4073 at 65.907 kb on - strand, within GFF4073 at 65.907 kb on - strand, within GFF4073 at 66.160 kb on - strand, within GFF4073 at 66.160 kb on - strand, within GFF4073 at 66.291 kb on + strand, within GFF4073 at 66.291 kb on + strand, within GFF4073 at 66.292 kb on - strand, within GFF4073 at 66.292 kb on - strand, within GFF4073 at 66.354 kb on + strand, within GFF4073 at 66.628 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.875 kb on - strand, within GFF4074 at 66.875 kb on - strand, within GFF4074 at 67.067 kb on - strand, within GFF4074 at 67.067 kb on - strand, within GFF4074 at 67.162 kb on + strand, within GFF4074 at 67.163 kb on - strand, within GFF4074 at 67.280 kb on - strand at 67.491 kb on - strand at 67.592 kb on - strand at 67.682 kb on + strand, within GFF4075 at 67.823 kb on + strand, within GFF4075 at 67.824 kb on - strand, within GFF4075 at 67.831 kb on - strand, within GFF4075 at 67.831 kb on - strand, within GFF4075 at 67.950 kb on + strand, within GFF4075 at 68.172 kb on + strand, within GFF4075 at 68.172 kb on + strand, within GFF4075 at 68.173 kb on - strand, within GFF4075
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 65,534 + +1.2 65,535 - -0.1 65,535 - -0.1 65,576 + +0.9 65,576 + +0.2 65,577 - +0.3 65,577 - -0.2 65,700 + GFF4073 0.13 -0.2 65,896 - GFF4073 0.34 -0.4 65,906 + GFF4073 0.36 +1.3 65,907 - GFF4073 0.36 +0.8 65,907 - GFF4073 0.36 +0.4 66,160 - GFF4073 0.64 -0.6 66,160 - GFF4073 0.64 +0.8 66,291 + GFF4073 0.79 +0.2 66,291 + GFF4073 0.79 +0.5 66,292 - GFF4073 0.79 +0.2 66,292 - GFF4073 0.79 +0.3 66,354 + GFF4073 0.86 +0.2 66,628 + GFF4074 0.20 -0.2 66,835 + GFF4074 0.47 +1.7 66,835 + GFF4074 0.47 +0.6 66,835 + GFF4074 0.47 +0.3 66,874 + GFF4074 0.52 -0.9 66,874 + GFF4074 0.52 -0.1 66,874 + GFF4074 0.52 +0.5 66,874 + GFF4074 0.52 -0.0 66,875 - GFF4074 0.52 -1.2 66,875 - GFF4074 0.52 -0.4 67,067 - GFF4074 0.77 -1.2 67,067 - GFF4074 0.77 -0.3 67,162 + GFF4074 0.89 +2.2 67,163 - GFF4074 0.89 +0.2 67,280 - -0.7 67,491 - -1.0 67,592 - -0.4 67,682 + GFF4075 0.10 -0.9 67,823 + GFF4075 0.28 +0.9 67,824 - GFF4075 0.28 +0.3 67,831 - GFF4075 0.29 -0.6 67,831 - GFF4075 0.29 -0.4 67,950 + GFF4075 0.44 -0.7 68,172 + GFF4075 0.72 +0.2 68,172 + GFF4075 0.72 +0.6 68,173 - GFF4075 0.72 -0.0
Or see this region's nucleotide sequence