Strain Fitness in Xanthobacter sp. DMC5 around GFF4058

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4057 and GFF4058 are separated by 96 nucleotidesGFF4058 and GFF4059 overlap by 37 nucleotides GFF4057 - Transcriptional regulator KdgR, at 47,836 to 48,759 GFF4057 GFF4058 - Alcohol dehydrogenase [acceptor], at 48,856 to 50,562 GFF4058 GFF4059 - Fosfomycin resistance protein AbaF, at 50,526 to 51,866 GFF4059 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.452 kb on + strand, within GFF4057at 48.452 kb on + strand, within GFF4057at 49.093 kb on + strand, within GFF4058at 49.094 kb on - strand, within GFF4058at 49.094 kb on - strand, within GFF4058at 49.171 kb on + strand, within GFF4058at 49.171 kb on + strand, within GFF4058at 49.171 kb on + strand, within GFF4058at 49.228 kb on + strand, within GFF4058at 49.229 kb on - strand, within GFF4058at 49.414 kb on + strand, within GFF4058at 49.414 kb on + strand, within GFF4058at 49.414 kb on + strand, within GFF4058at 49.417 kb on + strand, within GFF4058at 49.417 kb on + strand, within GFF4058at 49.418 kb on - strand, within GFF4058at 49.465 kb on + strand, within GFF4058at 49.465 kb on + strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.466 kb on - strand, within GFF4058at 49.683 kb on + strand, within GFF4058at 49.683 kb on + strand, within GFF4058at 49.684 kb on - strand, within GFF4058at 49.765 kb on + strand, within GFF4058at 49.765 kb on + strand, within GFF4058at 49.766 kb on - strand, within GFF4058at 49.840 kb on + strand, within GFF4058at 49.987 kb on + strand, within GFF4058at 49.987 kb on + strand, within GFF4058at 50.092 kb on + strand, within GFF4058at 50.093 kb on - strand, within GFF4058at 50.093 kb on - strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.179 kb on + strand, within GFF4058at 50.180 kb on - strand, within GFF4058at 50.180 kb on - strand, within GFF4058at 50.180 kb on - strand, within GFF4058at 50.180 kb on - strand, within GFF4058at 50.180 kb on - strand, within GFF4058at 50.251 kb on + strand, within GFF4058at 50.334 kb on - strand, within GFF4058at 50.608 kb on - strandat 50.622 kb on + strandat 50.622 kb on + strandat 50.623 kb on - strandat 50.658 kb on + strandat 50.658 kb on + strandat 50.700 kb on + strand, within GFF4059at 50.701 kb on - strand, within GFF4059at 50.701 kb on - strand, within GFF4059at 50.701 kb on - strand, within GFF4059at 50.850 kb on + strand, within GFF4059at 50.850 kb on + strand, within GFF4059at 50.850 kb on + strand, within GFF4059at 50.851 kb on - strand, within GFF4059at 50.851 kb on - strand, within GFF4059at 50.952 kb on + strand, within GFF4059at 50.953 kb on - strand, within GFF4059at 50.958 kb on + strand, within GFF4059at 50.958 kb on + strand, within GFF4059at 50.959 kb on - strand, within GFF4059at 51.138 kb on + strand, within GFF4059at 51.138 kb on + strand, within GFF4059at 51.138 kb on + strand, within GFF4059at 51.138 kb on + strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.139 kb on - strand, within GFF4059at 51.270 kb on + strand, within GFF4059at 51.271 kb on - strand, within GFF4059at 51.309 kb on + strand, within GFF4059at 51.330 kb on + strand, within GFF4059at 51.330 kb on + strand, within GFF4059at 51.330 kb on + strand, within GFF4059at 51.331 kb on - strand, within GFF4059at 51.331 kb on - strand, within GFF4059at 51.331 kb on - strand, within GFF4059at 51.331 kb on - strand, within GFF4059at 51.447 kb on + strand, within GFF4059at 51.447 kb on + strand, within GFF4059at 51.447 kb on + strand, within GFF4059at 51.447 kb on + strand, within GFF4059at 51.447 kb on + strand, within GFF4059at 51.448 kb on - strand, within GFF4059at 51.448 kb on - strand, within GFF4059at 51.561 kb on + strand, within GFF4059at 51.562 kb on - strand, within GFF4059

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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48,276 - GFF4057 0.48 +0.7
48,276 - GFF4057 0.48 +1.4
48,276 - GFF4057 0.48 +0.9
48,276 - GFF4057 0.48 +1.2
48,452 + GFF4057 0.67 +0.2
48,452 + GFF4057 0.67 +1.5
49,093 + GFF4058 0.14 +0.9
49,094 - GFF4058 0.14 +0.6
49,094 - GFF4058 0.14 +1.4
49,171 + GFF4058 0.18 +0.5
49,171 + GFF4058 0.18 +0.1
49,171 + GFF4058 0.18 +0.4
49,228 + GFF4058 0.22 -0.5
49,229 - GFF4058 0.22 -0.6
49,414 + GFF4058 0.33 +0.0
49,414 + GFF4058 0.33 -0.0
49,414 + GFF4058 0.33 +1.6
49,417 + GFF4058 0.33 -0.3
49,417 + GFF4058 0.33 +0.2
49,418 - GFF4058 0.33 -0.1
49,465 + GFF4058 0.36 -0.1
49,465 + GFF4058 0.36 -0.3
49,466 - GFF4058 0.36 +0.1
49,466 - GFF4058 0.36 +0.5
49,466 - GFF4058 0.36 -0.9
49,466 - GFF4058 0.36 -0.0
49,466 - GFF4058 0.36 -0.3
49,466 - GFF4058 0.36 -0.1
49,683 + GFF4058 0.48 +0.2
49,683 + GFF4058 0.48 +0.7
49,684 - GFF4058 0.49 +0.2
49,765 + GFF4058 0.53 -0.0
49,765 + GFF4058 0.53 +0.7
49,766 - GFF4058 0.53 -0.4
49,840 + GFF4058 0.58 -0.5
49,987 + GFF4058 0.66 +0.7
49,987 + GFF4058 0.66 +0.5
50,092 + GFF4058 0.72 +0.2
50,093 - GFF4058 0.72 +0.1
50,093 - GFF4058 0.72 -0.1
50,179 + GFF4058 0.78 +0.4
50,179 + GFF4058 0.78 +0.6
50,179 + GFF4058 0.78 +0.1
50,179 + GFF4058 0.78 +0.5
50,179 + GFF4058 0.78 +0.5
50,179 + GFF4058 0.78 +1.2
50,180 - GFF4058 0.78 -1.0
50,180 - GFF4058 0.78 +0.4
50,180 - GFF4058 0.78 +0.6
50,180 - GFF4058 0.78 +0.3
50,180 - GFF4058 0.78 -0.4
50,251 + GFF4058 0.82 +0.7
50,334 - GFF4058 0.87 +0.2
50,608 - -0.0
50,622 + -1.5
50,622 + +2.0
50,623 - -0.2
50,658 + -0.0
50,658 + +0.5
50,700 + GFF4059 0.13 +0.9
50,701 - GFF4059 0.13 +0.0
50,701 - GFF4059 0.13 -1.1
50,701 - GFF4059 0.13 -1.2
50,850 + GFF4059 0.24 +0.4
50,850 + GFF4059 0.24 -0.1
50,850 + GFF4059 0.24 +0.0
50,851 - GFF4059 0.24 -0.2
50,851 - GFF4059 0.24 +1.2
50,952 + GFF4059 0.32 +1.3
50,953 - GFF4059 0.32 -0.2
50,958 + GFF4059 0.32 -0.1
50,958 + GFF4059 0.32 +0.7
50,959 - GFF4059 0.32 -0.7
51,138 + GFF4059 0.46 +0.4
51,138 + GFF4059 0.46 +0.1
51,138 + GFF4059 0.46 +1.0
51,138 + GFF4059 0.46 +0.0
51,139 - GFF4059 0.46 +0.7
51,139 - GFF4059 0.46 +0.5
51,139 - GFF4059 0.46 -0.1
51,139 - GFF4059 0.46 -0.3
51,139 - GFF4059 0.46 -0.5
51,139 - GFF4059 0.46 -0.5
51,139 - GFF4059 0.46 -1.4
51,270 + GFF4059 0.55 +0.4
51,271 - GFF4059 0.56 +0.5
51,309 + GFF4059 0.58 -2.7
51,330 + GFF4059 0.60 -0.1
51,330 + GFF4059 0.60 -0.2
51,330 + GFF4059 0.60 -0.2
51,331 - GFF4059 0.60 -0.2
51,331 - GFF4059 0.60 +0.3
51,331 - GFF4059 0.60 +0.3
51,331 - GFF4059 0.60 -0.8
51,447 + GFF4059 0.69 -0.1
51,447 + GFF4059 0.69 +0.9
51,447 + GFF4059 0.69 -0.4
51,447 + GFF4059 0.69 -0.3
51,447 + GFF4059 0.69 -0.1
51,448 - GFF4059 0.69 -0.9
51,448 - GFF4059 0.69 +0.5
51,561 + GFF4059 0.77 -2.0
51,562 - GFF4059 0.77 -0.2

Or see this region's nucleotide sequence