Strain Fitness in Xanthobacter sp. DMC5 around GFF4056

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4055 and GFF4056 are separated by 601 nucleotidesGFF4056 and GFF4057 are separated by 97 nucleotides GFF4055 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 40,934 to 41,962 GFF4055 GFF4056 - Adaptive-response sensory-kinase SasA, at 42,564 to 47,738 GFF4056 GFF4057 - Transcriptional regulator KdgR, at 47,836 to 48,759 GFF4057 Position (kb) 42 43 44 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 41.786 kb on + strand, within GFF4055at 41.787 kb on - strand, within GFF4055at 41.892 kb on - strandat 41.906 kb on + strandat 41.907 kb on - strandat 41.907 kb on - strandat 42.128 kb on + strandat 42.129 kb on - strandat 42.366 kb on - strandat 42.366 kb on - strandat 42.387 kb on + strandat 42.531 kb on - strandat 42.537 kb on - strandat 43.188 kb on + strand, within GFF4056at 43.189 kb on - strand, within GFF4056at 43.189 kb on - strand, within GFF4056at 43.189 kb on - strand, within GFF4056at 43.337 kb on + strand, within GFF4056at 43.338 kb on - strand, within GFF4056at 43.356 kb on + strand, within GFF4056at 43.357 kb on - strand, within GFF4056at 43.689 kb on + strand, within GFF4056at 43.690 kb on - strand, within GFF4056at 44.055 kb on + strand, within GFF4056at 44.055 kb on + strand, within GFF4056at 44.365 kb on - strand, within GFF4056at 44.365 kb on - strand, within GFF4056at 44.568 kb on + strand, within GFF4056at 44.568 kb on + strand, within GFF4056at 44.568 kb on + strand, within GFF4056at 44.569 kb on - strand, within GFF4056at 44.569 kb on - strand, within GFF4056at 44.604 kb on + strand, within GFF4056at 44.604 kb on + strand, within GFF4056at 44.605 kb on - strand, within GFF4056at 44.605 kb on - strand, within GFF4056at 44.837 kb on + strand, within GFF4056at 44.970 kb on + strand, within GFF4056at 45.057 kb on + strand, within GFF4056at 45.058 kb on - strand, within GFF4056at 45.151 kb on - strand, within GFF4056at 45.357 kb on + strand, within GFF4056at 45.357 kb on + strand, within GFF4056at 45.357 kb on + strand, within GFF4056at 45.358 kb on - strand, within GFF4056at 45.396 kb on + strand, within GFF4056at 45.405 kb on + strand, within GFF4056at 45.405 kb on + strand, within GFF4056at 45.406 kb on - strand, within GFF4056at 45.406 kb on - strand, within GFF4056at 45.423 kb on + strand, within GFF4056at 45.601 kb on - strand, within GFF4056at 45.601 kb on - strand, within GFF4056at 45.601 kb on - strand, within GFF4056at 45.752 kb on + strand, within GFF4056at 45.771 kb on + strand, within GFF4056at 45.772 kb on - strand, within GFF4056at 45.772 kb on - strand, within GFF4056at 45.772 kb on - strand, within GFF4056at 45.840 kb on + strand, within GFF4056at 45.936 kb on - strand, within GFF4056at 46.155 kb on + strand, within GFF4056at 46.155 kb on + strand, within GFF4056at 46.156 kb on - strand, within GFF4056at 46.156 kb on - strand, within GFF4056at 46.156 kb on - strand, within GFF4056at 46.230 kb on + strand, within GFF4056at 46.230 kb on + strand, within GFF4056at 46.231 kb on - strand, within GFF4056at 46.297 kb on - strand, within GFF4056at 46.551 kb on + strand, within GFF4056at 46.552 kb on - strand, within GFF4056at 46.552 kb on - strand, within GFF4056at 46.552 kb on - strand, within GFF4056at 46.833 kb on + strand, within GFF4056at 46.833 kb on + strand, within GFF4056at 46.834 kb on - strand, within GFF4056at 46.938 kb on + strand, within GFF4056at 46.939 kb on - strand, within GFF4056at 47.046 kb on + strand, within GFF4056at 47.046 kb on + strand, within GFF4056at 47.167 kb on + strand, within GFF4056at 47.168 kb on - strand, within GFF4056at 47.679 kb on + strandat 47.679 kb on + strandat 47.680 kb on - strandat 47.680 kb on - strandat 47.680 kb on - strandat 47.760 kb on + strandat 47.785 kb on + strandat 47.785 kb on + strandat 47.786 kb on - strandat 47.786 kb on - strandat 47.786 kb on - strandat 47.786 kb on - strandat 47.786 kb on - strandat 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.276 kb on - strand, within GFF4057at 48.452 kb on + strand, within GFF4057at 48.452 kb on + strand, within GFF4057

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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41,786 + GFF4055 0.83 +0.2
41,787 - GFF4055 0.83 +0.0
41,892 - -0.4
41,906 + +0.8
41,907 - -0.1
41,907 - +0.5
42,128 + -0.2
42,129 - -1.1
42,366 - +0.3
42,366 - +0.1
42,387 + +0.1
42,531 - -2.0
42,537 - -0.0
43,188 + GFF4056 0.12 -0.0
43,189 - GFF4056 0.12 +0.4
43,189 - GFF4056 0.12 -0.3
43,189 - GFF4056 0.12 +0.4
43,337 + GFF4056 0.15 +0.4
43,338 - GFF4056 0.15 -0.3
43,356 + GFF4056 0.15 -0.5
43,357 - GFF4056 0.15 -0.5
43,689 + GFF4056 0.22 +0.3
43,690 - GFF4056 0.22 +0.7
44,055 + GFF4056 0.29 -0.6
44,055 + GFF4056 0.29 +0.9
44,365 - GFF4056 0.35 -1.3
44,365 - GFF4056 0.35 +0.9
44,568 + GFF4056 0.39 -0.3
44,568 + GFF4056 0.39 -0.6
44,568 + GFF4056 0.39 -1.2
44,569 - GFF4056 0.39 -0.1
44,569 - GFF4056 0.39 -0.0
44,604 + GFF4056 0.39 +1.1
44,604 + GFF4056 0.39 +0.7
44,605 - GFF4056 0.39 +0.3
44,605 - GFF4056 0.39 +0.0
44,837 + GFF4056 0.44 -0.7
44,970 + GFF4056 0.46 +0.3
45,057 + GFF4056 0.48 +0.6
45,058 - GFF4056 0.48 -0.0
45,151 - GFF4056 0.50 -0.3
45,357 + GFF4056 0.54 -0.7
45,357 + GFF4056 0.54 +0.6
45,357 + GFF4056 0.54 -0.4
45,358 - GFF4056 0.54 +0.6
45,396 + GFF4056 0.55 +0.6
45,405 + GFF4056 0.55 +0.8
45,405 + GFF4056 0.55 -0.2
45,406 - GFF4056 0.55 -0.5
45,406 - GFF4056 0.55 -0.2
45,423 + GFF4056 0.55 +0.2
45,601 - GFF4056 0.59 +0.6
45,601 - GFF4056 0.59 -0.5
45,601 - GFF4056 0.59 -0.1
45,752 + GFF4056 0.62 -0.8
45,771 + GFF4056 0.62 +0.2
45,772 - GFF4056 0.62 -0.4
45,772 - GFF4056 0.62 +0.1
45,772 - GFF4056 0.62 -1.0
45,840 + GFF4056 0.63 -0.6
45,936 - GFF4056 0.65 +0.6
46,155 + GFF4056 0.69 -0.2
46,155 + GFF4056 0.69 -0.1
46,156 - GFF4056 0.69 -0.3
46,156 - GFF4056 0.69 -0.4
46,156 - GFF4056 0.69 +0.3
46,230 + GFF4056 0.71 -0.0
46,230 + GFF4056 0.71 +0.3
46,231 - GFF4056 0.71 +0.9
46,297 - GFF4056 0.72 -0.1
46,551 + GFF4056 0.77 -0.7
46,552 - GFF4056 0.77 +0.3
46,552 - GFF4056 0.77 -1.1
46,552 - GFF4056 0.77 +0.1
46,833 + GFF4056 0.82 +0.3
46,833 + GFF4056 0.82 -1.1
46,834 - GFF4056 0.83 -0.5
46,938 + GFF4056 0.85 +0.1
46,939 - GFF4056 0.85 -0.6
47,046 + GFF4056 0.87 +0.5
47,046 + GFF4056 0.87 +0.1
47,167 + GFF4056 0.89 -0.6
47,168 - GFF4056 0.89 -0.6
47,679 + +0.2
47,679 + -0.7
47,680 - -0.6
47,680 - +0.1
47,680 - -0.1
47,760 + -1.4
47,785 + -0.4
47,785 + +0.2
47,786 - +0.7
47,786 - +0.0
47,786 - -0.4
47,786 - +0.5
47,786 - +0.6
48,276 - GFF4057 0.48 +0.7
48,276 - GFF4057 0.48 +1.4
48,276 - GFF4057 0.48 +0.9
48,276 - GFF4057 0.48 +1.2
48,452 + GFF4057 0.67 +0.2
48,452 + GFF4057 0.67 +1.5

Or see this region's nucleotide sequence