Strain Fitness in Xanthobacter sp. DMC5 around GFF4053

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4052 and GFF4053 are separated by 273 nucleotidesGFF4053 and GFF4054 are separated by 2 nucleotides GFF4052 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 36,040 to 36,939 GFF4052 GFF4053 - Protein YdeP, at 37,213 to 39,510 GFF4053 GFF4054 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 39,513 to 40,931 GFF4054 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 36.317 kb on - strand, within GFF4052at 36.481 kb on + strand, within GFF4052at 36.482 kb on - strand, within GFF4052at 36.559 kb on + strand, within GFF4052at 36.559 kb on + strand, within GFF4052at 36.560 kb on - strand, within GFF4052at 36.560 kb on - strand, within GFF4052at 36.593 kb on - strand, within GFF4052at 36.722 kb on - strand, within GFF4052at 36.937 kb on + strandat 36.937 kb on + strandat 36.938 kb on - strandat 36.988 kb on - strandat 37.058 kb on + strandat 37.059 kb on - strandat 37.071 kb on + strandat 37.086 kb on + strandat 37.087 kb on - strandat 37.129 kb on + strandat 37.130 kb on - strandat 37.240 kb on + strandat 37.488 kb on + strand, within GFF4053at 37.489 kb on - strand, within GFF4053at 37.520 kb on - strand, within GFF4053at 37.561 kb on + strand, within GFF4053at 37.561 kb on + strand, within GFF4053at 37.583 kb on - strand, within GFF4053at 37.667 kb on - strand, within GFF4053at 37.667 kb on - strand, within GFF4053at 38.076 kb on + strand, within GFF4053at 38.076 kb on + strand, within GFF4053at 38.085 kb on + strand, within GFF4053at 38.085 kb on + strand, within GFF4053at 38.085 kb on + strand, within GFF4053at 38.085 kb on + strand, within GFF4053at 38.086 kb on - strand, within GFF4053at 38.086 kb on - strand, within GFF4053at 38.281 kb on + strand, within GFF4053at 38.282 kb on - strand, within GFF4053at 38.282 kb on - strand, within GFF4053at 38.282 kb on - strand, within GFF4053at 38.311 kb on + strand, within GFF4053at 38.311 kb on + strand, within GFF4053at 38.567 kb on + strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.881 kb on - strand, within GFF4053at 38.950 kb on + strand, within GFF4053at 38.951 kb on - strand, within GFF4053at 38.951 kb on - strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 39.001 kb on + strand, within GFF4053at 39.175 kb on + strand, within GFF4053at 39.175 kb on + strand, within GFF4053at 39.190 kb on + strand, within GFF4053at 39.257 kb on - strand, within GFF4053at 39.388 kb on + strandat 39.389 kb on - strandat 39.392 kb on - strandat 39.392 kb on - strandat 39.421 kb on + strandat 39.421 kb on + strandat 39.651 kb on + strandat 39.732 kb on + strand, within GFF4054at 39.801 kb on + strand, within GFF4054at 40.002 kb on + strand, within GFF4054at 40.002 kb on + strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.384 kb on + strand, within GFF4054at 40.384 kb on + strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.386 kb on + strand, within GFF4054at 40.386 kb on + strand, within GFF4054

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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36,317 - GFF4052 0.31 +1.0
36,481 + GFF4052 0.49 -1.7
36,482 - GFF4052 0.49 -0.5
36,559 + GFF4052 0.58 -0.1
36,559 + GFF4052 0.58 -0.3
36,560 - GFF4052 0.58 -0.3
36,560 - GFF4052 0.58 +0.4
36,593 - GFF4052 0.61 +0.1
36,722 - GFF4052 0.76 +0.4
36,937 + -0.4
36,937 + -0.0
36,938 - -0.2
36,988 - -0.0
37,058 + -0.6
37,059 - -0.5
37,071 + +0.2
37,086 + +0.2
37,087 - -0.4
37,129 + +0.5
37,130 - +0.5
37,240 + +0.2
37,488 + GFF4053 0.12 +0.1
37,489 - GFF4053 0.12 -0.3
37,520 - GFF4053 0.13 -0.4
37,561 + GFF4053 0.15 -0.4
37,561 + GFF4053 0.15 +0.0
37,583 - GFF4053 0.16 +0.1
37,667 - GFF4053 0.20 -0.7
37,667 - GFF4053 0.20 -1.0
38,076 + GFF4053 0.38 +0.2
38,076 + GFF4053 0.38 -1.4
38,085 + GFF4053 0.38 -0.5
38,085 + GFF4053 0.38 +2.5
38,085 + GFF4053 0.38 +0.5
38,085 + GFF4053 0.38 +0.1
38,086 - GFF4053 0.38 -0.2
38,086 - GFF4053 0.38 -0.1
38,281 + GFF4053 0.46 -0.0
38,282 - GFF4053 0.47 -0.4
38,282 - GFF4053 0.47 -0.0
38,282 - GFF4053 0.47 +0.4
38,311 + GFF4053 0.48 +1.5
38,311 + GFF4053 0.48 +0.3
38,567 + GFF4053 0.59 +0.5
38,683 - GFF4053 0.64 -0.5
38,683 - GFF4053 0.64 -0.2
38,683 - GFF4053 0.64 -0.3
38,683 - GFF4053 0.64 +0.2
38,881 - GFF4053 0.73 -0.6
38,950 + GFF4053 0.76 -0.3
38,951 - GFF4053 0.76 -0.9
38,951 - GFF4053 0.76 +0.5
38,952 + GFF4053 0.76 +0.2
38,952 + GFF4053 0.76 +0.7
38,952 + GFF4053 0.76 -0.1
38,952 + GFF4053 0.76 -0.0
38,952 + GFF4053 0.76 +0.3
38,952 + GFF4053 0.76 -0.7
38,953 - GFF4053 0.76 -1.8
38,953 - GFF4053 0.76 -1.0
38,953 - GFF4053 0.76 -0.1
39,001 + GFF4053 0.78 +0.3
39,175 + GFF4053 0.85 +1.2
39,175 + GFF4053 0.85 -0.1
39,190 + GFF4053 0.86 -1.6
39,257 - GFF4053 0.89 -0.4
39,388 + -1.1
39,389 - -0.6
39,392 - -1.1
39,392 - -0.5
39,421 + -0.4
39,421 + +0.1
39,651 + +0.2
39,732 + GFF4054 0.15 +0.5
39,801 + GFF4054 0.20 +0.4
40,002 + GFF4054 0.34 +0.4
40,002 + GFF4054 0.34 -0.4
40,003 - GFF4054 0.35 +0.6
40,003 - GFF4054 0.35 -0.3
40,003 - GFF4054 0.35 +0.8
40,003 - GFF4054 0.35 -1.6
40,003 - GFF4054 0.35 -0.7
40,003 - GFF4054 0.35 +0.0
40,003 - GFF4054 0.35 +0.6
40,384 + GFF4054 0.61 -1.4
40,384 + GFF4054 0.61 -0.6
40,385 - GFF4054 0.61 +0.6
40,385 - GFF4054 0.61 -0.4
40,385 - GFF4054 0.61 -0.3
40,386 + GFF4054 0.62 -1.0
40,386 + GFF4054 0.62 +0.6

Or see this region's nucleotide sequence