Strain Fitness in Xanthobacter sp. DMC5 around GFF4007

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4006 and GFF4007 are separated by 58 nucleotidesGFF4007 and GFF4008 are separated by 3 nucleotides GFF4006 - 5-aminolevulinate synthase, at 381,242 to 382,525 GFF4006 GFF4007 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 382,584 to 383,408 GFF4007 GFF4008 - Vitamin B12 import ATP-binding protein BtuD, at 383,412 to 384,452 GFF4008 Position (kb) 382 383 384Strain fitness (log2 ratio) -1 0 1at 382.439 kb on + strandat 382.440 kb on - strandat 382.440 kb on - strandat 382.440 kb on - strandat 383.044 kb on + strand, within GFF4007at 383.095 kb on + strand, within GFF4007at 383.095 kb on + strand, within GFF4007at 383.095 kb on + strand, within GFF4007at 383.425 kb on + strandat 383.746 kb on + strand, within GFF4008at 383.746 kb on + strand, within GFF4008at 383.746 kb on + strand, within GFF4008at 383.767 kb on + strand, within GFF4008at 383.767 kb on + strand, within GFF4008at 383.767 kb on + strand, within GFF4008at 383.767 kb on + strand, within GFF4008at 383.768 kb on - strand, within GFF4008at 383.768 kb on - strand, within GFF4008at 383.866 kb on + strand, within GFF4008at 383.866 kb on + strand, within GFF4008at 383.866 kb on + strand, within GFF4008at 383.867 kb on - strand, within GFF4008at 383.867 kb on - strand, within GFF4008at 384.182 kb on - strand, within GFF4008

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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382,439 + -1.3
382,440 - +0.9
382,440 - -0.5
382,440 - -0.2
383,044 + GFF4007 0.56 +0.3
383,095 + GFF4007 0.62 -0.8
383,095 + GFF4007 0.62 +0.1
383,095 + GFF4007 0.62 +0.4
383,425 + -0.1
383,746 + GFF4008 0.32 -0.2
383,746 + GFF4008 0.32 -0.4
383,746 + GFF4008 0.32 +0.2
383,767 + GFF4008 0.34 +0.3
383,767 + GFF4008 0.34 -0.6
383,767 + GFF4008 0.34 +1.4
383,767 + GFF4008 0.34 -0.1
383,768 - GFF4008 0.34 +0.5
383,768 - GFF4008 0.34 -0.0
383,866 + GFF4008 0.44 +0.2
383,866 + GFF4008 0.44 +0.4
383,866 + GFF4008 0.44 -0.5
383,867 - GFF4008 0.44 +0.3
383,867 - GFF4008 0.44 -1.4
384,182 - GFF4008 0.74 -0.1

Or see this region's nucleotide sequence