Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4000 and GFF4001 are separated by 191 nucleotides GFF4001 and GFF4002 are separated by 249 nucleotides
GFF4000 - hypothetical protein, at 373,668 to 374,885
GFF4000
GFF4001 - Enterobactin exporter EntS, at 375,077 to 376,294
GFF4001
GFF4002 - Homospermidine synthase, at 376,544 to 377,974
GFF4002
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1
2
3 at 374.124 kb on + strand, within GFF4000 at 374.125 kb on - strand, within GFF4000 at 374.125 kb on - strand, within GFF4000 at 374.125 kb on - strand, within GFF4000 at 374.407 kb on - strand, within GFF4000 at 374.427 kb on - strand, within GFF4000 at 374.427 kb on - strand, within GFF4000 at 374.427 kb on - strand, within GFF4000 at 374.544 kb on + strand, within GFF4000 at 374.578 kb on - strand, within GFF4000 at 374.595 kb on + strand, within GFF4000 at 374.610 kb on + strand, within GFF4000 at 374.610 kb on + strand, within GFF4000 at 374.611 kb on - strand, within GFF4000 at 374.637 kb on + strand, within GFF4000 at 374.638 kb on - strand, within GFF4000 at 374.808 kb on + strand at 374.809 kb on - strand at 374.848 kb on - strand at 375.153 kb on + strand at 375.386 kb on + strand, within GFF4001 at 375.386 kb on + strand, within GFF4001 at 375.386 kb on + strand, within GFF4001 at 375.387 kb on - strand, within GFF4001 at 375.387 kb on - strand, within GFF4001 at 375.554 kb on + strand, within GFF4001 at 375.554 kb on + strand, within GFF4001 at 375.599 kb on + strand, within GFF4001 at 375.600 kb on - strand, within GFF4001 at 375.600 kb on - strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.789 kb on - strand, within GFF4001 at 375.789 kb on - strand, within GFF4001 at 376.440 kb on + strand at 376.754 kb on + strand, within GFF4002 at 376.875 kb on - strand, within GFF4002 at 376.875 kb on - strand, within GFF4002 at 376.910 kb on + strand, within GFF4002 at 376.910 kb on + strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.950 kb on - strand, within GFF4002 at 376.950 kb on - strand, within GFF4002
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 374,124 + GFF4000 0.37 -0.7 374,125 - GFF4000 0.38 +0.1 374,125 - GFF4000 0.38 -0.2 374,125 - GFF4000 0.38 -0.6 374,407 - GFF4000 0.61 -0.2 374,427 - GFF4000 0.62 -0.2 374,427 - GFF4000 0.62 +0.6 374,427 - GFF4000 0.62 -0.4 374,544 + GFF4000 0.72 -0.8 374,578 - GFF4000 0.75 -0.6 374,595 + GFF4000 0.76 -0.5 374,610 + GFF4000 0.77 +0.2 374,610 + GFF4000 0.77 +0.3 374,611 - GFF4000 0.77 -0.4 374,637 + GFF4000 0.80 +0.0 374,638 - GFF4000 0.80 +0.9 374,808 + -0.5 374,809 - -0.2 374,848 - -0.2 375,153 + -0.5 375,386 + GFF4001 0.25 -0.2 375,386 + GFF4001 0.25 +0.1 375,386 + GFF4001 0.25 +0.7 375,387 - GFF4001 0.25 -0.9 375,387 - GFF4001 0.25 -0.1 375,554 + GFF4001 0.39 -0.4 375,554 + GFF4001 0.39 -0.6 375,599 + GFF4001 0.43 +0.1 375,600 - GFF4001 0.43 +0.2 375,600 - GFF4001 0.43 -0.4 375,788 + GFF4001 0.58 +0.5 375,788 + GFF4001 0.58 -0.1 375,788 + GFF4001 0.58 -0.2 375,788 + GFF4001 0.58 +1.0 375,788 + GFF4001 0.58 -0.1 375,789 - GFF4001 0.58 +0.2 375,789 - GFF4001 0.58 +0.3 376,440 + -0.3 376,754 + GFF4002 0.15 +0.6 376,875 - GFF4002 0.23 +0.6 376,875 - GFF4002 0.23 +0.5 376,910 + GFF4002 0.26 +1.7 376,910 + GFF4002 0.26 +1.6 376,911 - GFF4002 0.26 +2.9 376,911 - GFF4002 0.26 +0.7 376,911 - GFF4002 0.26 +1.9 376,911 - GFF4002 0.26 +0.9 376,949 + GFF4002 0.28 +0.6 376,949 + GFF4002 0.28 +0.9 376,949 + GFF4002 0.28 +1.4 376,950 - GFF4002 0.28 +1.2 376,950 - GFF4002 0.28 +1.2
Or see this region's nucleotide sequence