Strain Fitness in Xanthobacter sp. DMC5 around GFF4000

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3999 and GFF4000 are separated by 382 nucleotidesGFF4000 and GFF4001 are separated by 191 nucleotides GFF3999 - hypothetical protein, at 372,635 to 373,285 GFF3999 GFF4000 - hypothetical protein, at 373,668 to 374,885 GFF4000 GFF4001 - Enterobactin exporter EntS, at 375,077 to 376,294 GFF4001 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1at 372.732 kb on + strand, within GFF3999at 372.732 kb on + strand, within GFF3999at 372.732 kb on + strand, within GFF3999at 372.733 kb on - strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.765 kb on + strand, within GFF3999at 372.766 kb on - strand, within GFF3999at 372.766 kb on - strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.795 kb on + strand, within GFF3999at 372.796 kb on - strand, within GFF3999at 373.203 kb on + strand, within GFF3999at 373.255 kb on - strandat 373.255 kb on - strandat 373.429 kb on - strandat 373.429 kb on - strandat 373.457 kb on + strandat 373.458 kb on - strandat 373.474 kb on + strandat 373.474 kb on + strandat 373.474 kb on + strandat 373.475 kb on - strandat 373.475 kb on - strandat 373.531 kb on - strandat 373.531 kb on - strandat 373.534 kb on + strandat 373.534 kb on + strandat 373.674 kb on + strandat 373.674 kb on + strandat 373.675 kb on - strandat 373.675 kb on - strandat 373.675 kb on - strandat 373.771 kb on - strandat 373.806 kb on + strand, within GFF4000at 373.806 kb on + strand, within GFF4000at 374.058 kb on + strand, within GFF4000at 374.059 kb on - strand, within GFF4000at 374.124 kb on + strand, within GFF4000at 374.125 kb on - strand, within GFF4000at 374.125 kb on - strand, within GFF4000at 374.125 kb on - strand, within GFF4000at 374.407 kb on - strand, within GFF4000at 374.427 kb on - strand, within GFF4000at 374.427 kb on - strand, within GFF4000at 374.427 kb on - strand, within GFF4000at 374.544 kb on + strand, within GFF4000at 374.578 kb on - strand, within GFF4000at 374.595 kb on + strand, within GFF4000at 374.610 kb on + strand, within GFF4000at 374.610 kb on + strand, within GFF4000at 374.611 kb on - strand, within GFF4000at 374.637 kb on + strand, within GFF4000at 374.638 kb on - strand, within GFF4000at 374.808 kb on + strandat 374.809 kb on - strandat 374.848 kb on - strandat 375.153 kb on + strandat 375.386 kb on + strand, within GFF4001at 375.386 kb on + strand, within GFF4001at 375.386 kb on + strand, within GFF4001at 375.387 kb on - strand, within GFF4001at 375.387 kb on - strand, within GFF4001at 375.554 kb on + strand, within GFF4001at 375.554 kb on + strand, within GFF4001at 375.599 kb on + strand, within GFF4001at 375.600 kb on - strand, within GFF4001at 375.600 kb on - strand, within GFF4001at 375.788 kb on + strand, within GFF4001at 375.788 kb on + strand, within GFF4001at 375.788 kb on + strand, within GFF4001at 375.788 kb on + strand, within GFF4001at 375.788 kb on + strand, within GFF4001at 375.789 kb on - strand, within GFF4001at 375.789 kb on - strand, within GFF4001

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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372,732 + GFF3999 0.15 +0.2
372,732 + GFF3999 0.15 +0.5
372,732 + GFF3999 0.15 +1.0
372,733 - GFF3999 0.15 -0.0
372,765 + GFF3999 0.20 +0.0
372,765 + GFF3999 0.20 +0.2
372,765 + GFF3999 0.20 -0.8
372,766 - GFF3999 0.20 +0.8
372,766 - GFF3999 0.20 +0.1
372,795 + GFF3999 0.25 +1.4
372,795 + GFF3999 0.25 +0.1
372,795 + GFF3999 0.25 +0.6
372,795 + GFF3999 0.25 +0.4
372,795 + GFF3999 0.25 -0.1
372,795 + GFF3999 0.25 -1.1
372,796 - GFF3999 0.25 -0.1
373,203 + GFF3999 0.87 -0.4
373,255 - -0.4
373,255 - +0.1
373,429 - +0.7
373,429 - -0.3
373,457 + -0.2
373,458 - -0.4
373,474 + -1.8
373,474 + -0.2
373,474 + +0.7
373,475 - -0.0
373,475 - +0.5
373,531 - +0.7
373,531 - -0.3
373,534 + +0.5
373,534 + -0.6
373,674 + -0.4
373,674 + -0.2
373,675 - +0.4
373,675 - -0.6
373,675 - +0.9
373,771 - +0.8
373,806 + GFF4000 0.11 +1.5
373,806 + GFF4000 0.11 -0.1
374,058 + GFF4000 0.32 -0.6
374,059 - GFF4000 0.32 +1.1
374,124 + GFF4000 0.37 -0.7
374,125 - GFF4000 0.38 +0.1
374,125 - GFF4000 0.38 -0.2
374,125 - GFF4000 0.38 -0.6
374,407 - GFF4000 0.61 -0.2
374,427 - GFF4000 0.62 -0.2
374,427 - GFF4000 0.62 +0.6
374,427 - GFF4000 0.62 -0.4
374,544 + GFF4000 0.72 -0.8
374,578 - GFF4000 0.75 -0.6
374,595 + GFF4000 0.76 -0.5
374,610 + GFF4000 0.77 +0.2
374,610 + GFF4000 0.77 +0.3
374,611 - GFF4000 0.77 -0.4
374,637 + GFF4000 0.80 +0.0
374,638 - GFF4000 0.80 +0.9
374,808 + -0.5
374,809 - -0.2
374,848 - -0.2
375,153 + -0.5
375,386 + GFF4001 0.25 -0.2
375,386 + GFF4001 0.25 +0.1
375,386 + GFF4001 0.25 +0.7
375,387 - GFF4001 0.25 -0.9
375,387 - GFF4001 0.25 -0.1
375,554 + GFF4001 0.39 -0.4
375,554 + GFF4001 0.39 -0.6
375,599 + GFF4001 0.43 +0.1
375,600 - GFF4001 0.43 +0.2
375,600 - GFF4001 0.43 -0.4
375,788 + GFF4001 0.58 +0.5
375,788 + GFF4001 0.58 -0.1
375,788 + GFF4001 0.58 -0.2
375,788 + GFF4001 0.58 +1.0
375,788 + GFF4001 0.58 -0.1
375,789 - GFF4001 0.58 +0.2
375,789 - GFF4001 0.58 +0.3

Or see this region's nucleotide sequence