Strain Fitness in Xanthobacter sp. DMC5 around GFF3973

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3972 and GFF3973 are separated by 169 nucleotidesGFF3973 and GFF3974 are separated by 5 nucleotidesGFF3974 and GFF3975 are separated by 7 nucleotides GFF3972 - CRP-like cAMP-activated global transcriptional regulator, at 340,398 to 341,174 GFF3972 GFF3973 - hypothetical protein, at 341,344 to 342,777 GFF3973 GFF3974 - hypothetical protein, at 342,783 to 343,748 GFF3974 GFF3975 - Nitrate import ATP-binding protein NrtD, at 343,756 to 344,631 GFF3975 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.352 kb on + strandat 340.352 kb on + strandat 340.352 kb on + strandat 340.353 kb on - strandat 340.390 kb on + strandat 340.390 kb on + strandat 340.588 kb on - strand, within GFF3972at 340.705 kb on - strand, within GFF3972at 340.893 kb on + strand, within GFF3972at 340.894 kb on - strand, within GFF3972at 340.974 kb on + strand, within GFF3972at 340.974 kb on + strand, within GFF3972at 340.974 kb on + strand, within GFF3972at 340.975 kb on - strand, within GFF3972at 340.975 kb on - strand, within GFF3972at 340.975 kb on - strand, within GFF3972at 340.975 kb on - strand, within GFF3972at 341.133 kb on + strandat 341.249 kb on - strandat 341.249 kb on - strandat 341.323 kb on + strandat 341.323 kb on + strandat 341.324 kb on - strandat 341.324 kb on - strandat 341.324 kb on - strandat 341.522 kb on - strand, within GFF3973at 341.522 kb on - strand, within GFF3973at 341.558 kb on - strand, within GFF3973at 341.624 kb on + strand, within GFF3973at 341.625 kb on - strand, within GFF3973at 341.648 kb on - strand, within GFF3973at 341.668 kb on + strand, within GFF3973at 341.668 kb on + strand, within GFF3973at 341.722 kb on + strand, within GFF3973at 341.732 kb on - strand, within GFF3973at 341.732 kb on - strand, within GFF3973at 341.773 kb on + strand, within GFF3973at 341.774 kb on - strand, within GFF3973at 341.774 kb on - strand, within GFF3973at 341.776 kb on + strand, within GFF3973at 341.776 kb on + strand, within GFF3973at 341.777 kb on - strand, within GFF3973at 341.881 kb on + strand, within GFF3973at 342.100 kb on + strand, within GFF3973at 342.101 kb on - strand, within GFF3973at 342.203 kb on - strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.350 kb on - strand, within GFF3973at 342.365 kb on - strand, within GFF3973at 342.385 kb on + strand, within GFF3973at 342.385 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.512 kb on - strand, within GFF3973at 342.512 kb on - strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.634 kb on + strandat 342.634 kb on + strandat 342.634 kb on + strandat 342.634 kb on + strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.164 kb on + strand, within GFF3974at 343.164 kb on + strand, within GFF3974at 343.165 kb on - strand, within GFF3974at 343.165 kb on - strand, within GFF3974at 343.494 kb on + strand, within GFF3974at 343.495 kb on - strand, within GFF3974at 343.541 kb on + strand, within GFF3974at 343.605 kb on + strand, within GFF3974at 343.605 kb on + strand, within GFF3974at 343.623 kb on + strand, within GFF3974at 343.624 kb on - strand, within GFF3974at 343.638 kb on + strand, within GFF3974at 343.639 kb on - strand, within GFF3974

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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340,352 + +0.4
340,352 + -0.3
340,352 + -0.8
340,353 - -0.5
340,390 + -0.9
340,390 + +0.2
340,588 - GFF3972 0.24 +0.5
340,705 - GFF3972 0.40 -1.1
340,893 + GFF3972 0.64 -0.4
340,894 - GFF3972 0.64 -0.6
340,974 + GFF3972 0.74 -0.2
340,974 + GFF3972 0.74 -0.5
340,974 + GFF3972 0.74 +0.5
340,975 - GFF3972 0.74 -0.4
340,975 - GFF3972 0.74 -0.2
340,975 - GFF3972 0.74 -0.5
340,975 - GFF3972 0.74 +0.0
341,133 + -0.9
341,249 - +0.1
341,249 - -0.1
341,323 + -0.4
341,323 + +0.1
341,324 - -0.2
341,324 - -0.2
341,324 - +0.3
341,522 - GFF3973 0.12 -0.0
341,522 - GFF3973 0.12 +0.0
341,558 - GFF3973 0.15 +0.5
341,624 + GFF3973 0.20 +0.4
341,625 - GFF3973 0.20 +1.4
341,648 - GFF3973 0.21 +0.5
341,668 + GFF3973 0.23 -0.2
341,668 + GFF3973 0.23 -0.1
341,722 + GFF3973 0.26 +0.2
341,732 - GFF3973 0.27 +0.5
341,732 - GFF3973 0.27 -0.1
341,773 + GFF3973 0.30 -0.3
341,774 - GFF3973 0.30 -1.0
341,774 - GFF3973 0.30 +0.3
341,776 + GFF3973 0.30 +1.7
341,776 + GFF3973 0.30 +0.3
341,777 - GFF3973 0.30 -1.3
341,881 + GFF3973 0.37 +1.0
342,100 + GFF3973 0.53 -0.3
342,101 - GFF3973 0.53 +0.6
342,203 - GFF3973 0.60 -0.7
342,349 + GFF3973 0.70 +0.4
342,349 + GFF3973 0.70 +1.4
342,349 + GFF3973 0.70 +0.1
342,349 + GFF3973 0.70 +0.2
342,349 + GFF3973 0.70 +0.5
342,349 + GFF3973 0.70 -0.1
342,350 - GFF3973 0.70 -0.7
342,365 - GFF3973 0.71 +0.4
342,385 + GFF3973 0.73 -0.4
342,385 + GFF3973 0.73 -0.3
342,511 + GFF3973 0.81 +0.5
342,511 + GFF3973 0.81 -0.1
342,511 + GFF3973 0.81 +0.8
342,512 - GFF3973 0.81 -0.3
342,512 - GFF3973 0.81 +0.0
342,583 + GFF3973 0.86 -0.4
342,583 + GFF3973 0.86 +0.3
342,583 + GFF3973 0.86 -0.0
342,583 + GFF3973 0.86 -0.3
342,583 + GFF3973 0.86 -0.3
342,583 + GFF3973 0.86 +1.7
342,583 + GFF3973 0.86 -0.1
342,583 + GFF3973 0.86 +0.6
342,583 + GFF3973 0.86 +0.1
342,584 - GFF3973 0.86 +0.1
342,584 - GFF3973 0.86 -0.1
342,584 - GFF3973 0.86 +0.4
342,634 + +0.2
342,634 + +0.8
342,634 + +0.4
342,634 + +0.2
342,635 - -0.3
342,635 - -0.9
342,635 - -0.0
342,635 - -0.3
342,635 - +0.3
343,074 + GFF3974 0.30 +0.7
343,074 + GFF3974 0.30 -0.1
343,074 + GFF3974 0.30 -0.5
343,074 + GFF3974 0.30 +0.4
343,074 + GFF3974 0.30 -1.9
343,075 - GFF3974 0.30 -0.3
343,075 - GFF3974 0.30 -0.6
343,075 - GFF3974 0.30 -0.2
343,164 + GFF3974 0.39 -0.8
343,164 + GFF3974 0.39 +1.9
343,165 - GFF3974 0.40 -0.7
343,165 - GFF3974 0.40 -0.2
343,494 + GFF3974 0.74 +0.1
343,495 - GFF3974 0.74 +0.2
343,541 + GFF3974 0.78 +0.2
343,605 + GFF3974 0.85 -0.7
343,605 + GFF3974 0.85 -0.4
343,623 + GFF3974 0.87 -0.0
343,624 - GFF3974 0.87 +0.0
343,638 + GFF3974 0.89 +0.3
343,639 - GFF3974 0.89 +0.7

Or see this region's nucleotide sequence