Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3960 and GFF3961 are separated by 239 nucleotides GFF3961 and GFF3962 are separated by 74 nucleotides GFF3962 and GFF3963 overlap by 4 nucleotides
GFF3960 - Carboxy-terminal processing protease CtpA, at 329,535 to 330,881
GFF3960
GFF3961 - L-cystine-binding protein FliY, at 331,121 to 331,930
GFF3961
GFF3962 - L-cystine transport system permease protein YecS, at 332,005 to 332,679
GFF3962
GFF3963 - L-cystine transport system permease protein YecS, at 332,676 to 333,335
GFF3963
Position (kb) 331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.925 kb on - strand at 331.323 kb on - strand, within GFF3961 at 331.409 kb on + strand, within GFF3961 at 331.410 kb on - strand, within GFF3961 at 331.410 kb on - strand, within GFF3961 at 331.496 kb on + strand, within GFF3961 at 331.496 kb on + strand, within GFF3961 at 331.496 kb on + strand, within GFF3961 at 331.497 kb on - strand, within GFF3961 at 331.497 kb on - strand, within GFF3961 at 331.650 kb on - strand, within GFF3961 at 331.650 kb on - strand, within GFF3961 at 332.011 kb on + strand at 332.011 kb on + strand at 332.041 kb on + strand at 332.170 kb on - strand, within GFF3962 at 332.182 kb on + strand, within GFF3962 at 332.183 kb on - strand, within GFF3962 at 332.183 kb on - strand, within GFF3962 at 332.266 kb on - strand, within GFF3962 at 332.314 kb on + strand, within GFF3962 at 332.315 kb on - strand, within GFF3962 at 332.315 kb on - strand, within GFF3962 at 332.423 kb on + strand, within GFF3962 at 332.423 kb on + strand, within GFF3962 at 332.596 kb on + strand, within GFF3962 at 332.596 kb on + strand, within GFF3962 at 332.596 kb on + strand, within GFF3962 at 332.841 kb on + strand, within GFF3963 at 332.841 kb on + strand, within GFF3963
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 330,925 - -0.3 331,323 - GFF3961 0.25 -1.1 331,409 + GFF3961 0.36 -0.0 331,410 - GFF3961 0.36 -0.2 331,410 - GFF3961 0.36 -0.1 331,496 + GFF3961 0.46 +0.1 331,496 + GFF3961 0.46 -0.1 331,496 + GFF3961 0.46 -0.3 331,497 - GFF3961 0.46 +0.7 331,497 - GFF3961 0.46 +0.2 331,650 - GFF3961 0.65 +0.4 331,650 - GFF3961 0.65 +0.1 332,011 + -0.4 332,011 + +1.1 332,041 + -0.5 332,170 - GFF3962 0.24 +0.9 332,182 + GFF3962 0.26 +0.1 332,183 - GFF3962 0.26 +0.2 332,183 - GFF3962 0.26 -1.0 332,266 - GFF3962 0.39 +0.1 332,314 + GFF3962 0.46 -0.1 332,315 - GFF3962 0.46 -3.1 332,315 - GFF3962 0.46 +0.4 332,423 + GFF3962 0.62 +2.5 332,423 + GFF3962 0.62 +0.4 332,596 + GFF3962 0.88 +0.8 332,596 + GFF3962 0.88 -0.4 332,596 + GFF3962 0.88 -0.0 332,841 + GFF3963 0.25 -0.4 332,841 + GFF3963 0.25 +0.4
Or see this region's nucleotide sequence