Strain Fitness in Xanthobacter sp. DMC5 around GFF3941

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3939 and GFF3940 are separated by 6 nucleotidesGFF3940 and GFF3941 are separated by 67 nucleotidesGFF3941 and GFF3942 are separated by 8 nucleotides GFF3939 - hypothetical protein, at 307,390 to 307,986 GFF3939 GFF3940 - hypothetical protein, at 307,993 to 308,694 GFF3940 GFF3941 - hypothetical protein, at 308,762 to 309,223 GFF3941 GFF3942 - Primosomal protein N', at 309,232 to 311,412 GFF3942 Position (kb) 308 309 310Strain fitness (log2 ratio) -1 0 1at 307.960 kb on + strandat 307.961 kb on - strandat 307.961 kb on - strandat 308.071 kb on + strand, within GFF3940at 308.514 kb on - strand, within GFF3940at 308.912 kb on + strand, within GFF3941at 308.913 kb on - strand, within GFF3941at 308.937 kb on + strand, within GFF3941at 308.937 kb on + strand, within GFF3941at 308.937 kb on + strand, within GFF3941at 309.069 kb on + strand, within GFF3941at 309.070 kb on - strand, within GFF3941at 309.141 kb on + strand, within GFF3941

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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307,960 + -0.0
307,961 - +0.7
307,961 - -0.4
308,071 + GFF3940 0.11 -0.1
308,514 - GFF3940 0.74 +0.0
308,912 + GFF3941 0.32 -0.0
308,913 - GFF3941 0.33 -0.2
308,937 + GFF3941 0.38 -1.3
308,937 + GFF3941 0.38 -0.3
308,937 + GFF3941 0.38 +0.3
309,069 + GFF3941 0.66 -0.6
309,070 - GFF3941 0.67 +0.5
309,141 + GFF3941 0.82 -0.6

Or see this region's nucleotide sequence