Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF393 and GFF394 are separated by 452 nucleotides GFF394 and GFF395 are separated by 65 nucleotides GFF395 and GFF396 are separated by 22 nucleotides
GFF393 - Beta-barrel assembly-enhancing protease, at 403,359 to 405,335
GFF393
GFF394 - hypothetical protein, at 405,788 to 406,483
GFF394
GFF395 - hypothetical protein, at 406,549 to 406,923
GFF395
GFF396 - HTH-type transcriptional regulator NorG, at 406,946 to 408,310
GFF396
Position (kb) 405
406
407 Strain fitness (log2 ratio) -1
0
1 at 405.084 kb on - strand, within GFF393 at 405.415 kb on + strand at 405.775 kb on + strand at 405.775 kb on + strand at 405.775 kb on + strand at 405.776 kb on - strand at 405.900 kb on - strand, within GFF394 at 405.962 kb on + strand, within GFF394 at 406.175 kb on + strand, within GFF394 at 406.178 kb on - strand, within GFF394 at 406.251 kb on - strand, within GFF394 at 406.609 kb on + strand, within GFF395 at 406.609 kb on + strand, within GFF395 at 406.610 kb on - strand, within GFF395 at 406.610 kb on - strand, within GFF395 at 406.921 kb on + strand at 406.922 kb on - strand at 406.922 kb on - strand at 407.136 kb on + strand, within GFF396 at 407.136 kb on + strand, within GFF396 at 407.137 kb on - strand, within GFF396
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 405,084 - GFF393 0.87 -0.3 405,415 + +0.9 405,775 + -0.1 405,775 + -0.1 405,775 + +0.2 405,776 - -0.6 405,900 - GFF394 0.16 +0.1 405,962 + GFF394 0.25 -0.1 406,175 + GFF394 0.56 +0.2 406,178 - GFF394 0.56 +0.8 406,251 - GFF394 0.67 -0.5 406,609 + GFF395 0.16 -0.3 406,609 + GFF395 0.16 -0.4 406,610 - GFF395 0.16 -0.1 406,610 - GFF395 0.16 +0.4 406,921 + -0.8 406,922 - +1.4 406,922 - -0.5 407,136 + GFF396 0.14 -0.1 407,136 + GFF396 0.14 +0.5 407,137 - GFF396 0.14 -0.5
Or see this region's nucleotide sequence