Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3936 and GFF3937 are separated by 312 nucleotides GFF3937 and GFF3938 are separated by 156 nucleotides
GFF3936 - hypothetical protein, at 304,094 to 305,068
GFF3936
GFF3937 - hypothetical protein, at 305,381 to 306,097
GFF3937
GFF3938 - Membrane-bound lytic murein transglycosylase A, at 306,254 to 307,393
GFF3938
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.666 kb on - strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.729 kb on - strand, within GFF3936 at 304.729 kb on - strand, within GFF3936 at 304.804 kb on - strand, within GFF3936 at 304.804 kb on - strand, within GFF3936 at 304.913 kb on + strand, within GFF3936 at 305.147 kb on - strand at 305.279 kb on + strand at 305.279 kb on + strand at 305.280 kb on - strand at 305.280 kb on - strand at 305.394 kb on - strand at 305.394 kb on - strand at 305.483 kb on + strand, within GFF3937 at 305.914 kb on + strand, within GFF3937 at 306.298 kb on - strand at 306.573 kb on - strand, within GFF3938 at 306.573 kb on - strand, within GFF3938 at 306.585 kb on - strand, within GFF3938 at 306.734 kb on + strand, within GFF3938 at 306.735 kb on - strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.909 kb on - strand, within GFF3938 at 306.909 kb on - strand, within GFF3938
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 304,666 - GFF3936 0.59 -0.8 304,728 + GFF3936 0.65 -2.1 304,728 + GFF3936 0.65 +0.1 304,728 + GFF3936 0.65 -0.0 304,728 + GFF3936 0.65 +0.6 304,729 - GFF3936 0.65 -0.4 304,729 - GFF3936 0.65 +0.4 304,804 - GFF3936 0.73 -0.4 304,804 - GFF3936 0.73 -0.2 304,913 + GFF3936 0.84 +0.2 305,147 - +0.4 305,279 + +0.5 305,279 + -0.6 305,280 - +0.5 305,280 - +0.2 305,394 - -0.8 305,394 - +0.6 305,483 + GFF3937 0.14 -0.5 305,914 + GFF3937 0.74 -1.0 306,298 - +0.1 306,573 - GFF3938 0.28 -0.5 306,573 - GFF3938 0.28 +0.4 306,585 - GFF3938 0.29 -0.8 306,734 + GFF3938 0.42 +0.3 306,735 - GFF3938 0.42 -1.1 306,908 + GFF3938 0.57 -0.3 306,908 + GFF3938 0.57 -0.1 306,908 + GFF3938 0.57 -0.3 306,909 - GFF3938 0.57 -0.3 306,909 - GFF3938 0.57 -0.7
Or see this region's nucleotide sequence