Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3934 and GFF3935 overlap by 4 nucleotides GFF3935 and GFF3936 are separated by 63 nucleotides GFF3936 and GFF3937 are separated by 312 nucleotides
GFF3934 - hypothetical protein, at 302,076 to 303,566
GFF3934
GFF3935 - hypothetical protein, at 303,563 to 304,030
GFF3935
GFF3936 - hypothetical protein, at 304,094 to 305,068
GFF3936
GFF3937 - hypothetical protein, at 305,381 to 306,097
GFF3937
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 303.231 kb on + strand, within GFF3934 at 303.283 kb on + strand, within GFF3934 at 303.284 kb on - strand, within GFF3934 at 303.298 kb on + strand, within GFF3934 at 303.405 kb on - strand, within GFF3934 at 303.617 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.631 kb on - strand, within GFF3935 at 303.631 kb on - strand, within GFF3935 at 303.758 kb on - strand, within GFF3935 at 303.759 kb on + strand, within GFF3935 at 303.760 kb on - strand, within GFF3935 at 303.760 kb on - strand, within GFF3935 at 304.183 kb on - strand at 304.236 kb on + strand, within GFF3936 at 304.237 kb on - strand, within GFF3936 at 304.666 kb on - strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.728 kb on + strand, within GFF3936 at 304.729 kb on - strand, within GFF3936 at 304.729 kb on - strand, within GFF3936 at 304.804 kb on - strand, within GFF3936 at 304.804 kb on - strand, within GFF3936 at 304.913 kb on + strand, within GFF3936 at 305.147 kb on - strand at 305.279 kb on + strand at 305.279 kb on + strand at 305.280 kb on - strand at 305.280 kb on - strand at 305.394 kb on - strand at 305.394 kb on - strand at 305.483 kb on + strand, within GFF3937 at 305.914 kb on + strand, within GFF3937
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 303,231 + GFF3934 0.77 +1.3 303,283 + GFF3934 0.81 -0.6 303,284 - GFF3934 0.81 +1.0 303,298 + GFF3934 0.82 +0.3 303,405 - GFF3934 0.89 +0.0 303,617 + GFF3935 0.12 +1.2 303,630 + GFF3935 0.14 +0.0 303,630 + GFF3935 0.14 -0.2 303,630 + GFF3935 0.14 +0.2 303,630 + GFF3935 0.14 +1.2 303,630 + GFF3935 0.14 +0.5 303,630 + GFF3935 0.14 +0.5 303,630 + GFF3935 0.14 +0.2 303,631 - GFF3935 0.15 +0.2 303,631 - GFF3935 0.15 +0.2 303,758 - GFF3935 0.42 +0.0 303,759 + GFF3935 0.42 -0.1 303,760 - GFF3935 0.42 +1.2 303,760 - GFF3935 0.42 -0.7 304,183 - +0.5 304,236 + GFF3936 0.15 +0.1 304,237 - GFF3936 0.15 +0.4 304,666 - GFF3936 0.59 -0.8 304,728 + GFF3936 0.65 -2.1 304,728 + GFF3936 0.65 +0.1 304,728 + GFF3936 0.65 -0.0 304,728 + GFF3936 0.65 +0.6 304,729 - GFF3936 0.65 -0.4 304,729 - GFF3936 0.65 +0.4 304,804 - GFF3936 0.73 -0.4 304,804 - GFF3936 0.73 -0.2 304,913 + GFF3936 0.84 +0.2 305,147 - +0.4 305,279 + +0.5 305,279 + -0.6 305,280 - +0.5 305,280 - +0.2 305,394 - -0.8 305,394 - +0.6 305,483 + GFF3937 0.14 -0.5 305,914 + GFF3937 0.74 -1.0
Or see this region's nucleotide sequence