Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3931 and GFF3932 are separated by 81 nucleotides GFF3932 and GFF3933 are separated by 10 nucleotides GFF3933 and GFF3934 are separated by 121 nucleotides
GFF3931 - S-adenosylmethionine/S-adenosylhomocysteine transporter, at 299,122 to 300,048
GFF3931
GFF3932 - HTH-type transcriptional regulator HdfR, at 300,130 to 301,002
GFF3932
GFF3933 - Glucokinase, at 301,013 to 301,954
GFF3933
GFF3934 - hypothetical protein, at 302,076 to 303,566
GFF3934
Position (kb) 301
302 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.200 kb on + strand, within GFF3933 at 301.200 kb on + strand, within GFF3933 at 301.200 kb on + strand, within GFF3933 at 301.201 kb on - strand, within GFF3933 at 301.201 kb on - strand, within GFF3933 at 301.815 kb on + strand, within GFF3933 at 301.815 kb on + strand, within GFF3933 at 301.845 kb on + strand, within GFF3933 at 301.982 kb on - strand at 302.338 kb on + strand, within GFF3934 at 302.339 kb on - strand, within GFF3934 at 302.359 kb on + strand, within GFF3934 at 302.504 kb on - strand, within GFF3934 at 302.560 kb on + strand, within GFF3934 at 302.734 kb on + strand, within GFF3934 at 302.734 kb on + strand, within GFF3934 at 302.735 kb on - strand, within GFF3934 at 302.824 kb on + strand, within GFF3934
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 301,200 + GFF3933 0.20 +0.2 301,200 + GFF3933 0.20 +1.0 301,200 + GFF3933 0.20 -2.7 301,201 - GFF3933 0.20 -0.3 301,201 - GFF3933 0.20 +0.1 301,815 + GFF3933 0.85 +1.3 301,815 + GFF3933 0.85 -0.1 301,845 + GFF3933 0.88 +0.2 301,982 - -0.2 302,338 + GFF3934 0.18 -2.7 302,339 - GFF3934 0.18 +0.7 302,359 + GFF3934 0.19 +0.4 302,504 - GFF3934 0.29 +0.5 302,560 + GFF3934 0.32 +1.9 302,734 + GFF3934 0.44 +0.6 302,734 + GFF3934 0.44 -0.3 302,735 - GFF3934 0.44 +0.9 302,824 + GFF3934 0.50 +1.9
Or see this region's nucleotide sequence