Strain Fitness in Xanthobacter sp. DMC5 around GFF3921

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3920 and GFF3921 are separated by 141 nucleotidesGFF3921 and GFF3922 are separated by 43 nucleotidesGFF3922 and GFF3923 are separated by 84 nucleotides GFF3920 - hypothetical protein, at 289,450 to 291,159 GFF3920 GFF3921 - Small heat shock protein IbpA, at 291,301 to 291,726 GFF3921 GFF3922 - hypothetical protein, at 291,770 to 292,036 GFF3922 GFF3923 - Nitrogen regulatory protein, at 292,121 to 292,585 GFF3923 Position (kb) 291 292Strain fitness (log2 ratio) -1 0 1at 290.492 kb on + strand, within GFF3920at 290.492 kb on + strand, within GFF3920at 291.031 kb on + strandat 291.032 kb on - strandat 291.032 kb on - strandat 291.082 kb on + strandat 291.205 kb on + strandat 291.206 kb on - strandat 291.404 kb on - strand, within GFF3921at 291.763 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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290,492 + GFF3920 0.61 -0.2
290,492 + GFF3920 0.61 +0.1
291,031 + +0.0
291,032 - +0.7
291,032 - +0.1
291,082 + +0.5
291,205 + +0.0
291,206 - +0.4
291,404 - GFF3921 0.24 -0.5
291,763 + -0.2

Or see this region's nucleotide sequence