Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3905 and GFF3906 are separated by 3 nucleotides GFF3906 and GFF3907 are separated by 221 nucleotides GFF3907 and GFF3908 are separated by 53 nucleotides
GFF3905 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 272,286 to 273,053
GFF3905
GFF3906 - Acetyl-coenzyme A synthetase, at 273,057 to 274,604
GFF3906
GFF3907 - hypothetical protein, at 274,826 to 275,119
GFF3907
GFF3908 - hypothetical protein, at 275,173 to 275,865
GFF3908
Position (kb) 273
274
275 Strain fitness (log2 ratio) -1
0
1 at 272.065 kb on + strand at 272.066 kb on - strand at 272.137 kb on - strand at 272.205 kb on - strand at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 273.042 kb on + strand at 273.042 kb on + strand at 273.042 kb on + strand at 273.043 kb on - strand at 273.043 kb on - strand at 273.066 kb on + strand at 273.142 kb on + strand at 273.143 kb on - strand at 273.268 kb on - strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.386 kb on - strand, within GFF3906 at 273.472 kb on + strand, within GFF3906 at 273.473 kb on - strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 274.093 kb on + strand, within GFF3906 at 274.094 kb on - strand, within GFF3906 at 274.094 kb on - strand, within GFF3906 at 274.094 kb on - strand, within GFF3906 at 274.094 kb on - strand, within GFF3906 at 274.300 kb on + strand, within GFF3906 at 274.581 kb on + strand at 274.582 kb on - strand at 274.582 kb on - strand at 274.588 kb on + strand at 274.633 kb on + strand at 274.633 kb on + strand at 274.634 kb on - strand at 274.924 kb on + strand, within GFF3907 at 274.924 kb on + strand, within GFF3907 at 274.924 kb on + strand, within GFF3907
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 272,065 + +0.4 272,066 - +0.5 272,137 - -0.4 272,205 - +0.4 272,370 + GFF3905 0.11 -0.8 272,370 + GFF3905 0.11 +0.9 272,370 + GFF3905 0.11 +0.6 272,370 + GFF3905 0.11 -0.8 272,371 - GFF3905 0.11 +0.5 272,371 - GFF3905 0.11 -1.1 272,371 - GFF3905 0.11 -1.0 272,958 + GFF3905 0.88 -0.5 272,958 + GFF3905 0.88 +0.6 272,958 + GFF3905 0.88 -0.9 273,042 + -0.1 273,042 + +0.5 273,042 + -0.6 273,043 - +0.8 273,043 - +1.1 273,066 + +0.4 273,142 + +1.0 273,143 - +0.4 273,268 - GFF3906 0.14 -0.2 273,385 + GFF3906 0.21 -0.1 273,385 + GFF3906 0.21 -0.1 273,385 + GFF3906 0.21 +0.1 273,385 + GFF3906 0.21 +0.4 273,386 - GFF3906 0.21 -0.8 273,472 + GFF3906 0.27 -0.5 273,473 - GFF3906 0.27 +0.0 273,640 + GFF3906 0.38 -0.7 273,640 + GFF3906 0.38 -0.1 273,640 + GFF3906 0.38 +0.3 273,640 + GFF3906 0.38 +0.5 273,641 - GFF3906 0.38 -0.1 273,641 - GFF3906 0.38 +0.3 273,641 - GFF3906 0.38 -0.5 273,641 - GFF3906 0.38 -0.7 273,641 - GFF3906 0.38 +0.9 273,641 - GFF3906 0.38 -0.8 274,093 + GFF3906 0.67 -0.2 274,094 - GFF3906 0.67 +0.2 274,094 - GFF3906 0.67 +0.1 274,094 - GFF3906 0.67 +0.6 274,094 - GFF3906 0.67 -0.3 274,300 + GFF3906 0.80 +1.0 274,581 + -0.5 274,582 - +0.1 274,582 - +0.6 274,588 + -1.2 274,633 + +0.2 274,633 + +0.3 274,634 - -0.0 274,924 + GFF3907 0.33 -0.6 274,924 + GFF3907 0.33 +0.2 274,924 + GFF3907 0.33 +1.4
Or see this region's nucleotide sequence