Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3871 and GFF3872 are separated by 12 nucleotides GFF3872 and GFF3873 are separated by 121 nucleotides
GFF3871 - hypothetical protein, at 235,875 to 236,969
GFF3871
GFF3872 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 236,982 to 238,115
GFF3872
GFF3873 - hypothetical protein, at 238,237 to 239,856
GFF3873
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -1
0
1 at 236.010 kb on + strand, within GFF3871 at 236.011 kb on - strand, within GFF3871 at 236.229 kb on - strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.493 kb on + strand, within GFF3871 at 237.208 kb on + strand, within GFF3872 at 237.945 kb on - strand, within GFF3872 at 238.197 kb on + strand at 238.198 kb on - strand at 238.198 kb on - strand at 238.274 kb on + strand at 238.275 kb on - strand at 238.275 kb on - strand at 238.359 kb on - strand at 238.359 kb on - strand at 238.359 kb on - strand at 238.365 kb on - strand at 238.859 kb on + strand, within GFF3873 at 238.859 kb on + strand, within GFF3873 at 238.859 kb on + strand, within GFF3873 at 238.859 kb on + strand, within GFF3873 at 238.860 kb on - strand, within GFF3873 at 238.860 kb on - strand, within GFF3873 at 238.892 kb on + strand, within GFF3873 at 238.892 kb on + strand, within GFF3873 at 238.893 kb on - strand, within GFF3873 at 238.941 kb on - strand, within GFF3873 at 238.941 kb on - strand, within GFF3873 at 238.941 kb on - strand, within GFF3873 at 238.941 kb on - strand, within GFF3873 at 239.018 kb on + strand, within GFF3873 at 239.018 kb on + strand, within GFF3873 at 239.018 kb on + strand, within GFF3873 at 239.027 kb on + strand, within GFF3873 at 239.070 kb on - strand, within GFF3873
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 236,010 + GFF3871 0.12 +0.3 236,011 - GFF3871 0.12 +1.1 236,229 - GFF3871 0.32 -1.6 236,286 + GFF3871 0.38 -0.4 236,286 + GFF3871 0.38 +0.1 236,286 + GFF3871 0.38 -0.4 236,493 + GFF3871 0.56 -0.4 237,208 + GFF3872 0.20 -0.2 237,945 - GFF3872 0.85 -1.3 238,197 + -0.5 238,198 - -0.4 238,198 - -0.3 238,274 + -0.2 238,275 - +0.1 238,275 - -1.7 238,359 - -1.1 238,359 - +0.2 238,359 - -0.2 238,365 - +0.2 238,859 + GFF3873 0.38 -0.2 238,859 + GFF3873 0.38 +1.5 238,859 + GFF3873 0.38 +0.1 238,859 + GFF3873 0.38 +0.2 238,860 - GFF3873 0.38 +0.1 238,860 - GFF3873 0.38 +0.9 238,892 + GFF3873 0.40 +0.1 238,892 + GFF3873 0.40 -0.4 238,893 - GFF3873 0.40 -0.4 238,941 - GFF3873 0.43 -1.1 238,941 - GFF3873 0.43 -0.2 238,941 - GFF3873 0.43 +0.3 238,941 - GFF3873 0.43 +0.0 239,018 + GFF3873 0.48 -0.2 239,018 + GFF3873 0.48 -0.5 239,018 + GFF3873 0.48 -0.5 239,027 + GFF3873 0.49 -0.1 239,070 - GFF3873 0.51 -0.2
Or see this region's nucleotide sequence