Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3869 and GFF3870 are separated by 10 nucleotides GFF3870 and GFF3871 are separated by 108 nucleotides GFF3871 and GFF3872 are separated by 12 nucleotides
GFF3869 - hypothetical protein, at 234,671 to 235,087
GFF3869
GFF3870 - Glutathione-specific gamma-glutamylcyclotransferase, at 235,098 to 235,766
GFF3870
GFF3871 - hypothetical protein, at 235,875 to 236,969
GFF3871
GFF3872 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 236,982 to 238,115
GFF3872
Position (kb) 235
236
237 Strain fitness (log2 ratio) -1
0
1 at 235.178 kb on - strand, within GFF3870 at 235.178 kb on - strand, within GFF3870 at 235.178 kb on - strand, within GFF3870 at 235.237 kb on + strand, within GFF3870 at 235.238 kb on - strand, within GFF3870 at 235.238 kb on - strand, within GFF3870 at 235.238 kb on - strand, within GFF3870 at 235.316 kb on - strand, within GFF3870 at 235.342 kb on + strand, within GFF3870 at 235.342 kb on + strand, within GFF3870 at 235.343 kb on - strand, within GFF3870 at 235.343 kb on - strand, within GFF3870 at 235.409 kb on - strand, within GFF3870 at 235.441 kb on + strand, within GFF3870 at 235.565 kb on - strand, within GFF3870 at 235.777 kb on + strand at 235.777 kb on + strand at 235.777 kb on + strand at 235.778 kb on - strand at 235.778 kb on - strand at 235.778 kb on - strand at 235.778 kb on - strand at 235.815 kb on + strand at 236.010 kb on + strand, within GFF3871 at 236.011 kb on - strand, within GFF3871 at 236.229 kb on - strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.286 kb on + strand, within GFF3871 at 236.493 kb on + strand, within GFF3871 at 237.208 kb on + strand, within GFF3872 at 237.945 kb on - strand, within GFF3872
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 235,178 - GFF3870 0.12 +0.8 235,178 - GFF3870 0.12 +0.3 235,178 - GFF3870 0.12 -0.4 235,237 + GFF3870 0.21 -0.3 235,238 - GFF3870 0.21 +0.2 235,238 - GFF3870 0.21 -1.2 235,238 - GFF3870 0.21 +0.8 235,316 - GFF3870 0.33 +1.4 235,342 + GFF3870 0.36 +0.1 235,342 + GFF3870 0.36 -0.3 235,343 - GFF3870 0.37 -0.6 235,343 - GFF3870 0.37 -0.1 235,409 - GFF3870 0.46 -0.1 235,441 + GFF3870 0.51 +0.7 235,565 - GFF3870 0.70 +0.4 235,777 + -0.2 235,777 + +0.3 235,777 + -0.4 235,778 - -0.1 235,778 - -0.9 235,778 - +0.1 235,778 - -0.6 235,815 + -0.6 236,010 + GFF3871 0.12 +0.3 236,011 - GFF3871 0.12 +1.1 236,229 - GFF3871 0.32 -1.6 236,286 + GFF3871 0.38 -0.4 236,286 + GFF3871 0.38 +0.1 236,286 + GFF3871 0.38 -0.4 236,493 + GFF3871 0.56 -0.4 237,208 + GFF3872 0.20 -0.2 237,945 - GFF3872 0.85 -1.3
Or see this region's nucleotide sequence