Strain Fitness in Xanthobacter sp. DMC5 around GFF3867

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3866 and GFF3867 are separated by 109 nucleotidesGFF3867 and GFF3868 are separated by 43 nucleotidesGFF3868 and GFF3869 are separated by 33 nucleotides GFF3866 - hypothetical protein, at 231,957 to 232,922 GFF3866 GFF3867 - hypothetical protein, at 233,032 to 233,787 GFF3867 GFF3868 - hypothetical protein, at 233,831 to 234,637 GFF3868 GFF3869 - hypothetical protein, at 234,671 to 235,087 GFF3869 Position (kb) 233 234Strain fitness (log2 ratio) -1 0 1at 233.591 kb on - strand, within GFF3867at 233.637 kb on + strand, within GFF3867at 233.665 kb on + strand, within GFF3867at 233.669 kb on - strand, within GFF3867at 233.669 kb on - strand, within GFF3867at 233.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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233,591 - GFF3867 0.74 +0.7
233,637 + GFF3867 0.80 -0.3
233,665 + GFF3867 0.84 +1.6
233,669 - GFF3867 0.84 +0.1
233,669 - GFF3867 0.84 +1.1
233,888 + +1.5

Or see this region's nucleotide sequence