Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3809 and GFF3810 overlap by 4 nucleotides GFF3810 and GFF3811 are separated by 137 nucleotides GFF3811 and GFF3812 are separated by 102 nucleotides GFF3812 and GFF3813 overlap by 1 nucleotides
GFF3809 - hypothetical protein, at 167,563 to 168,456
GFF3809
GFF3810 - hypothetical protein, at 168,453 to 169,067
GFF3810
GFF3811 - hypothetical protein, at 169,205 to 170,053
GFF3811
GFF3812 - Co-chaperone protein DjlA, at 170,156 to 170,860
GFF3812
GFF3813 - N-acetylmuramoyl-L-alanine amidase AmiD, at 170,860 to 171,639
GFF3813
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 168.846 kb on - strand, within GFF3810 at 168.861 kb on + strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.975 kb on + strand, within GFF3810 at 168.976 kb on - strand, within GFF3810 at 168.981 kb on + strand, within GFF3810 at 168.982 kb on - strand, within GFF3810 at 169.216 kb on - strand at 169.617 kb on - strand, within GFF3811 at 169.676 kb on + strand, within GFF3811 at 169.677 kb on - strand, within GFF3811 at 169.677 kb on - strand, within GFF3811 at 169.854 kb on - strand, within GFF3811 at 169.949 kb on - strand, within GFF3811 at 169.949 kb on - strand, within GFF3811 at 170.067 kb on - strand at 170.125 kb on + strand at 170.125 kb on + strand at 170.126 kb on - strand at 170.162 kb on + strand at 170.162 kb on + strand at 170.162 kb on + strand at 170.162 kb on + strand at 170.163 kb on - strand at 170.163 kb on - strand at 170.163 kb on - strand at 170.421 kb on - strand, within GFF3812 at 170.459 kb on + strand, within GFF3812 at 170.460 kb on - strand, within GFF3812 at 170.621 kb on + strand, within GFF3812 at 170.666 kb on + strand, within GFF3812 at 170.666 kb on + strand, within GFF3812 at 170.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 168,846 - GFF3810 0.64 +0.1 168,861 + GFF3810 0.66 +0.1 168,862 - GFF3810 0.67 -0.1 168,862 - GFF3810 0.67 -0.8 168,975 + GFF3810 0.85 +0.0 168,976 - GFF3810 0.85 -0.9 168,981 + GFF3810 0.86 -0.6 168,982 - GFF3810 0.86 -0.2 169,216 - -0.2 169,617 - GFF3811 0.49 -0.1 169,676 + GFF3811 0.55 -0.1 169,677 - GFF3811 0.56 +0.2 169,677 - GFF3811 0.56 +1.1 169,854 - GFF3811 0.76 -0.1 169,949 - GFF3811 0.88 +0.4 169,949 - GFF3811 0.88 -0.4 170,067 - -0.0 170,125 + -0.4 170,125 + +0.0 170,126 - -0.4 170,162 + -0.5 170,162 + -0.6 170,162 + -1.4 170,162 + -0.9 170,163 - +0.1 170,163 - +0.2 170,163 - +0.1 170,421 - GFF3812 0.38 +1.5 170,459 + GFF3812 0.43 -0.4 170,460 - GFF3812 0.43 -0.3 170,621 + GFF3812 0.66 +0.7 170,666 + GFF3812 0.72 -0.0 170,666 + GFF3812 0.72 -0.3 170,828 + -0.1
Or see this region's nucleotide sequence