Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3801 and GFF3802 are separated by 183 nucleotides GFF3802 and GFF3803 are separated by 157 nucleotides
GFF3801 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 158,748 to 159,584
GFF3801
GFF3802 - Phenylacetate-coenzyme A ligase, at 159,768 to 161,012
GFF3802
GFF3803 - hypothetical protein, at 161,170 to 162,174
GFF3803
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 158.817 kb on - strand at 158.829 kb on + strand at 158.829 kb on + strand at 158.829 kb on + strand at 158.829 kb on + strand at 158.830 kb on - strand at 158.830 kb on - strand at 158.830 kb on - strand at 158.918 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.120 kb on + strand, within GFF3801 at 159.121 kb on - strand, within GFF3801 at 159.121 kb on - strand, within GFF3801 at 159.122 kb on + strand, within GFF3801 at 159.122 kb on + strand, within GFF3801 at 159.123 kb on - strand, within GFF3801 at 159.165 kb on + strand, within GFF3801 at 159.165 kb on + strand, within GFF3801 at 159.172 kb on - strand, within GFF3801 at 159.211 kb on - strand, within GFF3801 at 159.211 kb on - strand, within GFF3801 at 159.420 kb on + strand, within GFF3801 at 159.420 kb on + strand, within GFF3801 at 159.421 kb on - strand, within GFF3801 at 159.421 kb on - strand, within GFF3801 at 159.421 kb on - strand, within GFF3801 at 159.426 kb on + strand, within GFF3801 at 159.426 kb on + strand, within GFF3801 at 159.426 kb on + strand, within GFF3801 at 159.426 kb on + strand, within GFF3801 at 159.427 kb on - strand, within GFF3801 at 159.504 kb on + strand at 159.616 kb on - strand at 159.673 kb on + strand at 159.673 kb on + strand at 159.674 kb on - strand at 159.674 kb on - strand at 159.674 kb on - strand at 159.674 kb on - strand at 159.999 kb on + strand, within GFF3802 at 160.000 kb on - strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.071 kb on + strand, within GFF3802 at 160.072 kb on - strand, within GFF3802 at 160.072 kb on - strand, within GFF3802 at 160.170 kb on + strand, within GFF3802 at 160.171 kb on - strand, within GFF3802 at 160.171 kb on - strand, within GFF3802 at 160.171 kb on - strand, within GFF3802 at 160.274 kb on + strand, within GFF3802 at 160.459 kb on - strand, within GFF3802 at 160.459 kb on - strand, within GFF3802 at 160.488 kb on + strand, within GFF3802 at 160.624 kb on - strand, within GFF3802 at 160.692 kb on - strand, within GFF3802 at 160.692 kb on - strand, within GFF3802 at 161.479 kb on + strand, within GFF3803 at 161.479 kb on + strand, within GFF3803 at 161.479 kb on + strand, within GFF3803 at 161.480 kb on - strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.840 kb on - strand, within GFF3803 at 161.840 kb on - strand, within GFF3803 at 161.840 kb on - strand, within GFF3803
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 158,817 - +0.3 158,829 + -0.0 158,829 + -0.1 158,829 + +0.5 158,829 + -0.1 158,830 - +0.9 158,830 - -0.1 158,830 - -1.2 158,918 + GFF3801 0.20 +0.7 159,120 + GFF3801 0.44 +0.3 159,120 + GFF3801 0.44 +0.1 159,120 + GFF3801 0.44 +0.0 159,120 + GFF3801 0.44 +1.0 159,120 + GFF3801 0.44 +0.5 159,120 + GFF3801 0.44 +0.1 159,121 - GFF3801 0.45 +1.2 159,121 - GFF3801 0.45 +0.2 159,122 + GFF3801 0.45 -0.1 159,122 + GFF3801 0.45 -1.1 159,123 - GFF3801 0.45 +0.3 159,165 + GFF3801 0.50 +0.4 159,165 + GFF3801 0.50 -0.4 159,172 - GFF3801 0.51 -0.3 159,211 - GFF3801 0.55 -0.1 159,211 - GFF3801 0.55 +0.6 159,420 + GFF3801 0.80 +0.2 159,420 + GFF3801 0.80 -0.8 159,421 - GFF3801 0.80 +0.1 159,421 - GFF3801 0.80 -1.4 159,421 - GFF3801 0.80 -0.5 159,426 + GFF3801 0.81 -0.1 159,426 + GFF3801 0.81 -0.4 159,426 + GFF3801 0.81 -0.6 159,426 + GFF3801 0.81 +0.4 159,427 - GFF3801 0.81 +0.0 159,504 + +0.4 159,616 - -1.1 159,673 + +0.6 159,673 + -0.4 159,674 - -0.8 159,674 - -0.3 159,674 - +0.6 159,674 - +1.0 159,999 + GFF3802 0.19 +0.1 160,000 - GFF3802 0.19 -1.6 160,071 + GFF3802 0.24 -2.3 160,071 + GFF3802 0.24 -1.8 160,071 + GFF3802 0.24 -1.6 160,071 + GFF3802 0.24 -1.6 160,071 + GFF3802 0.24 -2.1 160,071 + GFF3802 0.24 +0.2 160,071 + GFF3802 0.24 -0.2 160,072 - GFF3802 0.24 -0.7 160,072 - GFF3802 0.24 +0.9 160,170 + GFF3802 0.32 -0.6 160,171 - GFF3802 0.32 -0.6 160,171 - GFF3802 0.32 -0.8 160,171 - GFF3802 0.32 +0.0 160,274 + GFF3802 0.41 +0.8 160,459 - GFF3802 0.56 +0.2 160,459 - GFF3802 0.56 -0.7 160,488 + GFF3802 0.58 +0.2 160,624 - GFF3802 0.69 -0.8 160,692 - GFF3802 0.74 -1.1 160,692 - GFF3802 0.74 +1.6 161,479 + GFF3803 0.31 +0.6 161,479 + GFF3803 0.31 +0.9 161,479 + GFF3803 0.31 +0.2 161,480 - GFF3803 0.31 -0.0 161,839 + GFF3803 0.67 +0.3 161,839 + GFF3803 0.67 +0.0 161,839 + GFF3803 0.67 +0.2 161,840 - GFF3803 0.67 -0.0 161,840 - GFF3803 0.67 +0.1 161,840 - GFF3803 0.67 +0.9
Or see this region's nucleotide sequence