Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3782 and GFF3783 are separated by 183 nucleotides GFF3783 and GFF3784 are separated by 158 nucleotides
GFF3782 - Adaptive-response sensory-kinase SasA, at 131,713 to 133,158
GFF3782
GFF3783 - Nitrogen fixation regulation protein FixK, at 133,342 to 134,097
GFF3783
GFF3784 - Oxygen-independent coproporphyrinogen III oxidase, at 134,256 to 135,647
GFF3784
Position (kb) 133
134
135 Strain fitness (log2 ratio) -1
0
1 at 132.623 kb on + strand, within GFF3782 at 132.635 kb on + strand, within GFF3782 at 132.636 kb on - strand, within GFF3782 at 133.034 kb on - strand at 133.222 kb on - strand at 133.240 kb on - strand at 133.244 kb on - strand at 133.244 kb on - strand at 133.250 kb on - strand at 133.250 kb on - strand at 133.267 kb on + strand at 133.268 kb on - strand at 133.268 kb on - strand at 133.378 kb on + strand at 133.396 kb on + strand at 133.516 kb on + strand, within GFF3783 at 133.536 kb on - strand, within GFF3783 at 133.567 kb on + strand, within GFF3783 at 133.567 kb on + strand, within GFF3783 at 134.146 kb on + strand at 134.147 kb on - strand at 134.147 kb on - strand at 134.147 kb on - strand at 134.632 kb on + strand, within GFF3784 at 134.632 kb on + strand, within GFF3784 at 134.633 kb on - strand, within GFF3784 at 134.633 kb on - strand, within GFF3784 at 134.701 kb on + strand, within GFF3784 at 134.701 kb on + strand, within GFF3784 at 134.701 kb on + strand, within GFF3784 at 134.701 kb on + strand, within GFF3784 at 134.702 kb on - strand, within GFF3784 at 134.702 kb on - strand, within GFF3784 at 135.004 kb on + strand, within GFF3784 at 135.004 kb on + strand, within GFF3784 at 135.004 kb on + strand, within GFF3784 at 135.005 kb on - strand, within GFF3784
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 132,623 + GFF3782 0.63 -0.5 132,635 + GFF3782 0.64 -0.5 132,636 - GFF3782 0.64 -0.1 133,034 - +0.5 133,222 - -0.1 133,240 - -0.5 133,244 - -0.8 133,244 - -0.4 133,250 - -0.6 133,250 - -0.3 133,267 + +0.2 133,268 - +0.1 133,268 - -0.1 133,378 + -0.7 133,396 + -0.5 133,516 + GFF3783 0.23 -0.1 133,536 - GFF3783 0.26 -0.0 133,567 + GFF3783 0.30 -0.4 133,567 + GFF3783 0.30 +0.2 134,146 + +0.6 134,147 - +1.2 134,147 - +0.0 134,147 - +0.7 134,632 + GFF3784 0.27 +0.4 134,632 + GFF3784 0.27 -0.1 134,633 - GFF3784 0.27 -0.4 134,633 - GFF3784 0.27 -0.4 134,701 + GFF3784 0.32 -0.2 134,701 + GFF3784 0.32 -0.4 134,701 + GFF3784 0.32 +0.4 134,701 + GFF3784 0.32 -1.2 134,702 - GFF3784 0.32 +0.2 134,702 - GFF3784 0.32 -0.0 135,004 + GFF3784 0.54 -1.6 135,004 + GFF3784 0.54 +0.3 135,004 + GFF3784 0.54 +0.5 135,005 - GFF3784 0.54 +0.8
Or see this region's nucleotide sequence