Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3777 and GFF3778 are separated by 153 nucleotides GFF3778 and GFF3779 are separated by 202 nucleotides
GFF3777 - hypothetical protein, at 123,873 to 126,059
GFF3777
GFF3778 - putative signaling protein, at 126,213 to 127,544
GFF3778
GFF3779 - Peptidyl-lysine N-acetyltransferase PatZ, at 127,747 to 130,455
GFF3779
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1 at 125.347 kb on + strand, within GFF3777 at 125.347 kb on + strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.509 kb on - strand, within GFF3777 at 125.591 kb on - strand, within GFF3777 at 126.164 kb on + strand at 126.165 kb on - strand at 126.239 kb on + strand at 126.240 kb on - strand at 126.241 kb on + strand at 126.241 kb on + strand at 126.242 kb on - strand at 126.280 kb on + strand at 126.280 kb on + strand at 126.488 kb on - strand, within GFF3778 at 126.488 kb on - strand, within GFF3778 at 126.503 kb on - strand, within GFF3778 at 126.594 kb on + strand, within GFF3778 at 126.936 kb on + strand, within GFF3778 at 127.010 kb on - strand, within GFF3778 at 127.345 kb on + strand, within GFF3778 at 127.345 kb on + strand, within GFF3778 at 127.346 kb on - strand, within GFF3778 at 127.371 kb on - strand, within GFF3778 at 127.455 kb on + strand at 127.524 kb on + strand at 127.524 kb on + strand at 127.732 kb on + strand at 127.907 kb on - strand at 128.102 kb on + strand, within GFF3779
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 125,347 + GFF3777 0.67 +0.3 125,347 + GFF3777 0.67 -0.7 125,348 - GFF3777 0.67 -0.4 125,348 - GFF3777 0.67 -0.4 125,348 - GFF3777 0.67 -0.3 125,509 - GFF3777 0.75 -0.6 125,591 - GFF3777 0.79 -0.9 126,164 + +0.1 126,165 - -0.5 126,239 + -0.3 126,240 - -0.3 126,241 + +0.2 126,241 + +0.9 126,242 - +1.5 126,280 + +1.0 126,280 + +0.8 126,488 - GFF3778 0.21 -0.1 126,488 - GFF3778 0.21 +0.8 126,503 - GFF3778 0.22 -1.3 126,594 + GFF3778 0.29 -2.3 126,936 + GFF3778 0.54 +0.4 127,010 - GFF3778 0.60 +0.8 127,345 + GFF3778 0.85 -0.6 127,345 + GFF3778 0.85 +0.1 127,346 - GFF3778 0.85 -0.5 127,371 - GFF3778 0.87 +0.3 127,455 + +0.2 127,524 + -1.1 127,524 + +0.7 127,732 + +0.3 127,907 - -1.0 128,102 + GFF3779 0.13 +0.7
Or see this region's nucleotide sequence