Strain Fitness in Xanthobacter sp. DMC5 around GFF3722

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3720 and GFF3721 are separated by 3 nucleotidesGFF3721 and GFF3722 are separated by 24 nucleotidesGFF3722 and GFF3723 are separated by 8 nucleotides GFF3720 - PhoH-like protein, at 62,152 to 63,279 GFF3720 GFF3721 - Endoribonuclease YbeY, at 63,283 to 63,804 GFF3721 GFF3722 - hypothetical protein, at 63,829 to 64,797 GFF3722 GFF3723 - Apolipoprotein N-acyltransferase, at 64,806 to 66,455 GFF3723 Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1at 63.784 kb on + strandat 64.159 kb on + strand, within GFF3722at 64.274 kb on + strand, within GFF3722at 64.402 kb on + strand, within GFF3722at 64.522 kb on + strand, within GFF3722at 64.596 kb on + strand, within GFF3722at 64.596 kb on + strand, within GFF3722at 64.635 kb on + strand, within GFF3722at 64.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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63,784 + +0.4
64,159 + GFF3722 0.34 -2.1
64,274 + GFF3722 0.46 +0.3
64,402 + GFF3722 0.59 -0.9
64,522 + GFF3722 0.72 -1.4
64,596 + GFF3722 0.79 -1.1
64,596 + GFF3722 0.79 -1.3
64,635 + GFF3722 0.83 -3.3
64,729 + -1.9

Or see this region's nucleotide sequence