Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3712 and GFF3713 are separated by 88 nucleotides GFF3713 and GFF3714 are separated by 154 nucleotides GFF3714 and GFF3715 are separated by 159 nucleotides GFF3715 and GFF3716 are separated by 7 nucleotides
GFF3712 - Response regulator MprA, at 54,202 to 54,897
GFF3712
GFF3713 - Adaptive-response sensory-kinase SasA, at 54,986 to 56,635
GFF3713
GFF3714 - Protein-export protein SecB, at 56,790 to 57,269
GFF3714
GFF3715 - hypothetical protein, at 57,429 to 57,623
GFF3715
GFF3716 - Undecaprenyl-diphosphatase, at 57,631 to 58,437
GFF3716
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -1
0
1
2 at 53.988 kb on + strand at 54.081 kb on + strand at 54.308 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.318 kb on - strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.771 kb on - strand, within GFF3712 at 54.771 kb on - strand, within GFF3712 at 55.096 kb on + strand at 55.096 kb on + strand at 55.097 kb on - strand at 55.342 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.542 kb on - strand, within GFF3713 at 55.542 kb on - strand, within GFF3713 at 55.989 kb on + strand, within GFF3713 at 56.636 kb on - strand at 56.765 kb on - strand at 56.842 kb on + strand, within GFF3714 at 56.843 kb on - strand, within GFF3714 at 56.843 kb on - strand, within GFF3714 at 57.335 kb on - strand at 57.335 kb on - strand at 57.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 53,988 + +0.9 54,081 + +2.0 54,308 + GFF3712 0.15 +0.9 54,317 + GFF3712 0.17 +0.1 54,317 + GFF3712 0.17 +1.3 54,318 - GFF3712 0.17 +1.3 54,605 + GFF3712 0.58 +0.5 54,605 + GFF3712 0.58 +0.7 54,606 - GFF3712 0.58 +1.1 54,606 - GFF3712 0.58 +1.5 54,606 - GFF3712 0.58 +0.7 54,606 - GFF3712 0.58 +0.5 54,606 - GFF3712 0.58 +1.2 54,770 + GFF3712 0.82 +0.8 54,770 + GFF3712 0.82 +0.7 54,770 + GFF3712 0.82 +1.4 54,771 - GFF3712 0.82 +0.7 54,771 - GFF3712 0.82 +1.5 55,096 + +2.1 55,096 + +1.2 55,097 - +0.4 55,342 + GFF3713 0.22 +1.3 55,541 + GFF3713 0.34 +2.4 55,541 + GFF3713 0.34 +1.7 55,541 + GFF3713 0.34 +1.1 55,542 - GFF3713 0.34 -0.5 55,542 - GFF3713 0.34 +0.2 55,989 + GFF3713 0.61 +0.9 56,636 - -0.3 56,765 - -0.0 56,842 + GFF3714 0.11 -1.1 56,843 - GFF3714 0.11 +0.8 56,843 - GFF3714 0.11 -0.5 57,335 - +0.1 57,335 - +0.2 57,335 - +0.4
Or see this region's nucleotide sequence