Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF36 and GFF37 are separated by 33 nucleotides GFF37 and GFF38 are separated by 100 nucleotides GFF38 and GFF39 are separated by 11 nucleotides
GFF36 - Acetophenone carboxylase gamma subunit, at 44,360 to 46,405
GFF36
GFF37 - 5-keto-4-deoxy-D-glucarate aldolase, at 46,439 to 47,182
GFF37
GFF38 - Inner membrane ABC transporter permease protein YdcV, at 47,283 to 48,077
GFF38
GFF39 - Spermidine/putrescine transport system permease protein PotB, at 48,089 to 48,964
GFF39
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 45.685 kb on - strand, within GFF36 at 45.738 kb on + strand, within GFF36 at 45.739 kb on - strand, within GFF36 at 45.900 kb on + strand, within GFF36 at 45.900 kb on + strand, within GFF36 at 45.901 kb on - strand, within GFF36 at 46.033 kb on - strand, within GFF36 at 46.084 kb on - strand, within GFF36 at 46.084 kb on - strand, within GFF36 at 46.212 kb on + strand at 46.212 kb on + strand at 46.212 kb on + strand at 46.213 kb on - strand at 46.213 kb on - strand at 46.213 kb on - strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.500 kb on + strand at 46.501 kb on - strand at 46.501 kb on - strand at 46.501 kb on - strand at 46.656 kb on + strand, within GFF37 at 46.657 kb on - strand, within GFF37 at 46.809 kb on + strand, within GFF37 at 46.810 kb on - strand, within GFF37 at 46.831 kb on - strand, within GFF37 at 46.878 kb on + strand, within GFF37 at 46.878 kb on + strand, within GFF37 at 47.004 kb on + strand, within GFF37 at 47.004 kb on + strand, within GFF37 at 47.410 kb on + strand, within GFF38 at 47.410 kb on + strand, within GFF38 at 47.410 kb on + strand, within GFF38 at 47.411 kb on - strand, within GFF38 at 47.411 kb on - strand, within GFF38 at 47.411 kb on - strand, within GFF38 at 47.411 kb on - strand, within GFF38 at 47.809 kb on - strand, within GFF38 at 47.809 kb on - strand, within GFF38 at 47.818 kb on + strand, within GFF38 at 47.819 kb on - strand, within GFF38 at 47.927 kb on - strand, within GFF38 at 47.994 kb on + strand, within GFF38 at 48.030 kb on - strand at 48.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 45,685 - GFF36 0.65 -0.5 45,738 + GFF36 0.67 -0.1 45,739 - GFF36 0.67 +0.0 45,900 + GFF36 0.75 +0.1 45,900 + GFF36 0.75 -0.1 45,901 - GFF36 0.75 +0.7 46,033 - GFF36 0.82 -1.1 46,084 - GFF36 0.84 +0.3 46,084 - GFF36 0.84 +0.0 46,212 + -0.4 46,212 + -0.0 46,212 + -0.3 46,213 - -0.5 46,213 - -0.3 46,213 - +0.7 46,500 + +0.2 46,500 + +0.5 46,500 + -0.3 46,500 + +0.4 46,500 + -0.7 46,501 - +0.4 46,501 - -0.1 46,501 - -0.2 46,656 + GFF37 0.29 +0.6 46,657 - GFF37 0.29 -0.1 46,809 + GFF37 0.50 +0.2 46,810 - GFF37 0.50 +0.3 46,831 - GFF37 0.53 -1.5 46,878 + GFF37 0.59 -0.2 46,878 + GFF37 0.59 -0.2 47,004 + GFF37 0.76 +0.9 47,004 + GFF37 0.76 +0.2 47,410 + GFF38 0.16 -0.1 47,410 + GFF38 0.16 -0.2 47,410 + GFF38 0.16 +0.5 47,411 - GFF38 0.16 -0.3 47,411 - GFF38 0.16 +0.9 47,411 - GFF38 0.16 -0.4 47,411 - GFF38 0.16 +0.3 47,809 - GFF38 0.66 +0.5 47,809 - GFF38 0.66 -0.0 47,818 + GFF38 0.67 -1.1 47,819 - GFF38 0.67 +0.1 47,927 - GFF38 0.81 +0.2 47,994 + GFF38 0.89 +0.4 48,030 - -0.2 48,118 - +1.3
Or see this region's nucleotide sequence