Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3693 and GFF3694 are separated by 147 nucleotides GFF3694 and GFF3695 are separated by 98 nucleotides GFF3695 and GFF3696 are separated by 339 nucleotides
GFF3693 - Lactate utilization protein A, at 35,192 to 36,511
GFF3693
GFF3694 - Thiamine-phosphate synthase, at 36,659 to 37,294
GFF3694
GFF3695 - Malate synthase A, at 37,393 to 39,003
GFF3695
GFF3696 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 39,343 to 40,245
GFF3696
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 36.556 kb on + strand at 36.556 kb on + strand at 36.557 kb on - strand at 36.557 kb on - strand at 36.557 kb on - strand at 37.864 kb on + strand, within GFF3695 at 37.864 kb on + strand, within GFF3695 at 37.865 kb on - strand, within GFF3695 at 37.985 kb on - strand, within GFF3695 at 37.985 kb on - strand, within GFF3695 at 38.033 kb on - strand, within GFF3695 at 38.038 kb on + strand, within GFF3695 at 38.039 kb on - strand, within GFF3695 at 38.239 kb on + strand, within GFF3695 at 38.240 kb on - strand, within GFF3695 at 38.240 kb on - strand, within GFF3695 at 38.240 kb on - strand, within GFF3695 at 38.335 kb on + strand, within GFF3695 at 38.336 kb on - strand, within GFF3695 at 38.683 kb on + strand, within GFF3695 at 38.684 kb on - strand, within GFF3695 at 38.725 kb on + strand, within GFF3695 at 38.986 kb on + strand at 39.227 kb on - strand at 39.360 kb on + strand at 39.360 kb on + strand at 39.628 kb on + strand, within GFF3696 at 39.629 kb on - strand, within GFF3696 at 39.745 kb on + strand, within GFF3696
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 36,556 + +0.2 36,556 + -0.1 36,557 - -1.7 36,557 - -1.0 36,557 - -2.0 37,864 + GFF3695 0.29 -0.5 37,864 + GFF3695 0.29 +0.6 37,865 - GFF3695 0.29 -0.2 37,985 - GFF3695 0.37 -0.2 37,985 - GFF3695 0.37 -1.6 38,033 - GFF3695 0.40 +0.8 38,038 + GFF3695 0.40 -0.4 38,039 - GFF3695 0.40 -0.1 38,239 + GFF3695 0.53 +0.3 38,240 - GFF3695 0.53 +0.5 38,240 - GFF3695 0.53 +0.4 38,240 - GFF3695 0.53 -0.1 38,335 + GFF3695 0.58 +0.4 38,336 - GFF3695 0.59 -0.3 38,683 + GFF3695 0.80 +0.7 38,684 - GFF3695 0.80 +0.3 38,725 + GFF3695 0.83 -0.3 38,986 + -1.1 39,227 - -1.8 39,360 + +0.4 39,360 + -0.1 39,628 + GFF3696 0.32 +0.2 39,629 - GFF3696 0.32 +0.8 39,745 + GFF3696 0.45 +0.8
Or see this region's nucleotide sequence