Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3687 and GFF3688 are separated by 187 nucleotides GFF3688 and GFF3689 overlap by 11 nucleotides GFF3689 and GFF3690 are separated by 240 nucleotides
GFF3687 - hypothetical protein, at 29,091 to 29,780
GFF3687
GFF3688 - hypothetical protein, at 29,968 to 30,285
GFF3688
GFF3689 - Inner membrane protein YgaZ, at 30,275 to 30,985
GFF3689
GFF3690 - HTH-type transcriptional regulator DmlR, at 31,226 to 32,173
GFF3690
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 29.060 kb on - strand at 29.190 kb on + strand, within GFF3687 at 29.191 kb on - strand, within GFF3687 at 29.191 kb on - strand, within GFF3687 at 29.490 kb on + strand, within GFF3687 at 29.502 kb on + strand, within GFF3687 at 29.505 kb on + strand, within GFF3687 at 29.505 kb on + strand, within GFF3687 at 29.506 kb on - strand, within GFF3687 at 29.528 kb on + strand, within GFF3687 at 29.529 kb on - strand, within GFF3687 at 29.878 kb on - strand at 30.097 kb on + strand, within GFF3688 at 30.097 kb on + strand, within GFF3688 at 30.570 kb on + strand, within GFF3689 at 30.570 kb on + strand, within GFF3689 at 30.570 kb on + strand, within GFF3689 at 30.570 kb on + strand, within GFF3689 at 30.571 kb on - strand, within GFF3689 at 30.652 kb on - strand, within GFF3689 at 30.652 kb on - strand, within GFF3689 at 31.022 kb on - strand at 31.022 kb on - strand at 31.144 kb on + strand at 31.145 kb on - strand at 31.145 kb on - strand at 31.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 29,060 - +0.9 29,190 + GFF3687 0.14 +1.2 29,191 - GFF3687 0.14 +0.8 29,191 - GFF3687 0.14 +1.5 29,490 + GFF3687 0.58 +1.6 29,502 + GFF3687 0.60 +0.3 29,505 + GFF3687 0.60 +0.3 29,505 + GFF3687 0.60 +0.3 29,506 - GFF3687 0.60 -0.7 29,528 + GFF3687 0.63 +1.0 29,529 - GFF3687 0.63 +1.4 29,878 - -0.5 30,097 + GFF3688 0.41 -1.6 30,097 + GFF3688 0.41 -0.7 30,570 + GFF3689 0.41 -0.0 30,570 + GFF3689 0.41 -0.0 30,570 + GFF3689 0.41 +0.3 30,570 + GFF3689 0.41 -0.6 30,571 - GFF3689 0.42 +0.0 30,652 - GFF3689 0.53 -0.1 30,652 - GFF3689 0.53 -0.5 31,022 - -0.4 31,022 - -0.4 31,144 + +0.4 31,145 - +0.5 31,145 - +0.1 31,145 - -1.6
Or see this region's nucleotide sequence