Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3670 and GFF3671 are separated by 326 nucleotides GFF3671 and GFF3672 are separated by 24 nucleotides GFF3672 and GFF3673 are separated by 14 nucleotides
GFF3670 - Chaperone protein ClpB, at 9,857 to 12,502
GFF3670
GFF3671 - hypothetical protein, at 12,829 to 13,650
GFF3671
GFF3672 - hypothetical protein, at 13,675 to 14,022
GFF3672
GFF3673 - hypothetical protein, at 14,037 to 14,780
GFF3673
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 12.028 kb on - strand, within GFF3670 at 12.028 kb on - strand, within GFF3670 at 12.028 kb on - strand, within GFF3670 at 12.189 kb on + strand, within GFF3670 at 12.189 kb on + strand, within GFF3670 at 12.190 kb on - strand, within GFF3670 at 12.190 kb on - strand, within GFF3670 at 12.258 kb on + strand at 12.258 kb on + strand at 12.259 kb on - strand at 12.259 kb on - strand at 12.259 kb on - strand at 12.486 kb on + strand at 12.487 kb on - strand at 12.545 kb on + strand at 12.546 kb on - strand at 12.546 kb on - strand at 12.905 kb on - strand at 12.970 kb on + strand, within GFF3671 at 12.971 kb on - strand, within GFF3671 at 12.991 kb on + strand, within GFF3671 at 12.991 kb on + strand, within GFF3671 at 13.105 kb on + strand, within GFF3671 at 13.105 kb on + strand, within GFF3671 at 13.105 kb on + strand, within GFF3671 at 13.106 kb on - strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.216 kb on + strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.217 kb on - strand, within GFF3671 at 13.581 kb on + strand at 13.581 kb on + strand at 13.582 kb on - strand at 13.585 kb on + strand at 13.585 kb on + strand at 13.586 kb on - strand at 13.586 kb on - strand at 13.586 kb on - strand at 14.002 kb on + strand at 14.172 kb on + strand, within GFF3673 at 14.172 kb on + strand, within GFF3673 at 14.172 kb on + strand, within GFF3673 at 14.172 kb on + strand, within GFF3673 at 14.173 kb on - strand, within GFF3673 at 14.173 kb on - strand, within GFF3673 at 14.229 kb on + strand, within GFF3673 at 14.230 kb on - strand, within GFF3673 at 14.241 kb on + strand, within GFF3673 at 14.515 kb on - strand, within GFF3673 at 14.515 kb on - strand, within GFF3673 at 14.515 kb on - strand, within GFF3673
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 12,028 - GFF3670 0.82 +0.0 12,028 - GFF3670 0.82 -1.1 12,028 - GFF3670 0.82 +0.0 12,189 + GFF3670 0.88 +0.6 12,189 + GFF3670 0.88 +0.4 12,190 - GFF3670 0.88 -0.4 12,190 - GFF3670 0.88 -0.5 12,258 + -0.2 12,258 + +0.2 12,259 - -0.9 12,259 - -0.7 12,259 - -1.5 12,486 + +0.8 12,487 - -0.1 12,545 + +0.2 12,546 - -0.4 12,546 - +0.7 12,905 - -0.5 12,970 + GFF3671 0.17 +1.2 12,971 - GFF3671 0.17 +0.4 12,991 + GFF3671 0.20 +0.5 12,991 + GFF3671 0.20 -0.2 13,105 + GFF3671 0.34 +0.5 13,105 + GFF3671 0.34 -1.8 13,105 + GFF3671 0.34 -0.2 13,106 - GFF3671 0.34 +0.6 13,216 + GFF3671 0.47 -0.4 13,216 + GFF3671 0.47 +0.0 13,216 + GFF3671 0.47 -0.8 13,216 + GFF3671 0.47 +0.3 13,216 + GFF3671 0.47 -0.4 13,216 + GFF3671 0.47 -0.8 13,217 - GFF3671 0.47 +0.6 13,217 - GFF3671 0.47 -0.4 13,217 - GFF3671 0.47 +0.5 13,217 - GFF3671 0.47 -0.6 13,217 - GFF3671 0.47 -0.2 13,217 - GFF3671 0.47 +0.7 13,581 + +0.2 13,581 + -0.1 13,582 - -0.4 13,585 + +0.4 13,585 + +0.7 13,586 - +0.6 13,586 - +0.9 13,586 - -0.3 14,002 + -0.2 14,172 + GFF3673 0.18 -0.0 14,172 + GFF3673 0.18 -0.7 14,172 + GFF3673 0.18 +0.1 14,172 + GFF3673 0.18 +0.2 14,173 - GFF3673 0.18 -1.4 14,173 - GFF3673 0.18 +0.1 14,229 + GFF3673 0.26 -0.0 14,230 - GFF3673 0.26 -0.0 14,241 + GFF3673 0.27 -0.3 14,515 - GFF3673 0.64 -0.3 14,515 - GFF3673 0.64 -0.1 14,515 - GFF3673 0.64 -1.0
Or see this region's nucleotide sequence