Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3655 and GFF3656 are separated by 454 nucleotides GFF3656 and GFF3657 are separated by 617 nucleotides
GFF3655 - hypothetical protein, at 521,448 to 521,708
GFF3655
GFF3656 - hypothetical protein, at 522,163 to 522,489
GFF3656
GFF3657 - hypothetical protein, at 523,107 to 523,541
GFF3657
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 521.202 kb on + strand at 521.203 kb on - strand at 521.215 kb on - strand at 521.215 kb on - strand at 521.215 kb on - strand at 521.221 kb on + strand at 521.221 kb on + strand at 521.222 kb on - strand at 521.222 kb on - strand at 521.222 kb on - strand at 521.274 kb on + strand at 521.274 kb on + strand at 521.274 kb on + strand at 521.275 kb on - strand at 521.275 kb on - strand at 521.281 kb on - strand at 521.397 kb on - strand at 521.477 kb on - strand, within GFF3655 at 521.629 kb on + strand, within GFF3655 at 521.630 kb on - strand, within GFF3655 at 521.630 kb on - strand, within GFF3655 at 521.630 kb on - strand, within GFF3655 at 521.653 kb on + strand, within GFF3655 at 521.653 kb on + strand, within GFF3655 at 521.654 kb on - strand, within GFF3655 at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.942 kb on + strand at 521.942 kb on + strand at 521.969 kb on + strand at 521.970 kb on - strand at 521.970 kb on - strand at 521.970 kb on - strand at 521.970 kb on - strand at 521.981 kb on - strand at 521.981 kb on - strand at 522.242 kb on + strand, within GFF3656 at 522.243 kb on - strand, within GFF3656 at 522.243 kb on - strand, within GFF3656 at 522.243 kb on - strand, within GFF3656 at 522.287 kb on + strand, within GFF3656 at 522.287 kb on + strand, within GFF3656 at 522.287 kb on + strand, within GFF3656 at 522.628 kb on + strand at 522.628 kb on + strand at 522.628 kb on + strand at 522.629 kb on - strand at 522.761 kb on + strand at 522.761 kb on + strand at 522.762 kb on - strand at 522.807 kb on + strand at 522.807 kb on + strand at 522.807 kb on + strand at 522.808 kb on - strand at 522.808 kb on - strand at 522.839 kb on + strand at 522.896 kb on + strand at 522.897 kb on - strand at 523.073 kb on + strand at 523.116 kb on + strand at 523.117 kb on - strand at 523.117 kb on - strand at 523.117 kb on - strand at 523.249 kb on + strand, within GFF3657 at 523.249 kb on + strand, within GFF3657 at 523.249 kb on + strand, within GFF3657 at 523.249 kb on + strand, within GFF3657 at 523.249 kb on + strand, within GFF3657 at 523.250 kb on - strand, within GFF3657 at 523.250 kb on - strand, within GFF3657 at 523.261 kb on + strand, within GFF3657 at 523.261 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.359 kb on + strand, within GFF3657 at 523.360 kb on - strand, within GFF3657 at 523.360 kb on - strand, within GFF3657 at 523.360 kb on - strand, within GFF3657 at 523.420 kb on + strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.421 kb on - strand, within GFF3657 at 523.440 kb on + strand, within GFF3657 at 523.441 kb on - strand, within GFF3657 at 523.441 kb on - strand, within GFF3657
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 521,202 + -0.5 521,203 - +0.2 521,215 - +0.6 521,215 - -0.2 521,215 - -1.2 521,221 + -0.1 521,221 + +0.6 521,222 - -0.5 521,222 - -1.0 521,222 - +0.1 521,274 + +0.1 521,274 + -0.7 521,274 + +0.0 521,275 - -1.2 521,275 - +0.5 521,281 - -1.2 521,397 - -0.3 521,477 - GFF3655 0.11 +0.1 521,629 + GFF3655 0.69 +0.2 521,630 - GFF3655 0.70 -0.4 521,630 - GFF3655 0.70 -0.8 521,630 - GFF3655 0.70 -0.0 521,653 + GFF3655 0.79 -0.1 521,653 + GFF3655 0.79 -0.7 521,654 - GFF3655 0.79 +0.2 521,753 + -0.2 521,754 - +0.2 521,754 - +0.1 521,754 - -0.2 521,754 - +0.2 521,942 + -0.5 521,942 + +0.3 521,969 + +0.3 521,970 - +0.5 521,970 - -0.5 521,970 - -0.1 521,970 - +0.7 521,981 - -0.8 521,981 - -0.2 522,242 + GFF3656 0.24 +1.0 522,243 - GFF3656 0.24 +0.1 522,243 - GFF3656 0.24 -0.1 522,243 - GFF3656 0.24 +0.2 522,287 + GFF3656 0.38 -0.4 522,287 + GFF3656 0.38 -0.5 522,287 + GFF3656 0.38 +0.4 522,628 + +0.2 522,628 + -0.2 522,628 + -0.6 522,629 - +0.6 522,761 + -1.0 522,761 + +0.3 522,762 - +2.0 522,807 + -0.5 522,807 + -0.3 522,807 + +0.1 522,808 - -0.9 522,808 - -0.2 522,839 + -0.0 522,896 + -0.0 522,897 - +0.3 523,073 + -0.7 523,116 + +0.6 523,117 - +0.3 523,117 - -0.0 523,117 - +0.4 523,249 + GFF3657 0.33 +0.4 523,249 + GFF3657 0.33 -0.1 523,249 + GFF3657 0.33 -0.7 523,249 + GFF3657 0.33 -0.0 523,249 + GFF3657 0.33 +0.3 523,250 - GFF3657 0.33 +2.1 523,250 - GFF3657 0.33 -0.8 523,261 + GFF3657 0.35 +0.5 523,261 + GFF3657 0.35 -0.3 523,359 + GFF3657 0.58 -0.0 523,359 + GFF3657 0.58 +0.4 523,359 + GFF3657 0.58 -0.6 523,359 + GFF3657 0.58 +0.3 523,359 + GFF3657 0.58 +0.8 523,359 + GFF3657 0.58 +0.6 523,360 - GFF3657 0.58 -0.6 523,360 - GFF3657 0.58 +0.2 523,360 - GFF3657 0.58 -0.9 523,420 + GFF3657 0.72 +0.2 523,421 - GFF3657 0.72 -1.3 523,421 - GFF3657 0.72 +0.5 523,421 - GFF3657 0.72 -0.6 523,421 - GFF3657 0.72 +0.1 523,421 - GFF3657 0.72 +0.2 523,421 - GFF3657 0.72 +0.6 523,440 + GFF3657 0.77 -1.9 523,441 - GFF3657 0.77 -0.4 523,441 - GFF3657 0.77 +0.1
Or see this region's nucleotide sequence