Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3639 and GFF3640 are separated by 400 nucleotides GFF3640 and GFF3641 are separated by 353 nucleotides
GFF3639 - IS1182 family transposase ISGdi16, at 502,694 to 504,070
GFF3639
GFF3640 - hypothetical protein, at 504,471 to 506,039
GFF3640
GFF3641 - hypothetical protein, at 506,393 to 507,571
GFF3641
Position (kb) 504
505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 503.539 kb on - strand, within GFF3639 at 503.805 kb on + strand, within GFF3639 at 503.805 kb on + strand, within GFF3639 at 503.806 kb on - strand, within GFF3639 at 503.806 kb on - strand, within GFF3639 at 503.865 kb on + strand, within GFF3639 at 503.928 kb on + strand, within GFF3639 at 503.928 kb on + strand, within GFF3639 at 503.929 kb on - strand, within GFF3639 at 503.929 kb on - strand, within GFF3639 at 503.929 kb on - strand, within GFF3639 at 504.030 kb on + strand at 504.030 kb on + strand at 504.222 kb on + strand at 504.230 kb on + strand at 504.230 kb on + strand at 504.231 kb on - strand at 504.340 kb on + strand at 504.342 kb on + strand at 504.350 kb on + strand at 504.350 kb on + strand at 504.351 kb on - strand at 504.351 kb on - strand at 504.374 kb on + strand at 504.375 kb on - strand at 504.375 kb on - strand at 504.447 kb on - strand at 504.449 kb on - strand at 504.462 kb on + strand at 504.463 kb on - strand at 504.484 kb on - strand at 504.484 kb on - strand at 504.506 kb on + strand at 504.509 kb on - strand at 504.539 kb on + strand at 504.539 kb on + strand at 504.539 kb on + strand at 504.549 kb on - strand at 504.607 kb on - strand at 504.607 kb on - strand at 504.616 kb on + strand at 504.656 kb on + strand, within GFF3640 at 504.657 kb on - strand, within GFF3640 at 504.657 kb on - strand, within GFF3640 at 504.657 kb on - strand, within GFF3640 at 504.669 kb on + strand, within GFF3640 at 504.770 kb on + strand, within GFF3640 at 504.771 kb on - strand, within GFF3640 at 504.773 kb on - strand, within GFF3640 at 504.788 kb on + strand, within GFF3640 at 504.789 kb on - strand, within GFF3640 at 504.798 kb on - strand, within GFF3640 at 504.868 kb on - strand, within GFF3640 at 504.908 kb on + strand, within GFF3640 at 504.909 kb on - strand, within GFF3640 at 504.909 kb on - strand, within GFF3640 at 504.909 kb on - strand, within GFF3640 at 504.909 kb on - strand, within GFF3640 at 504.910 kb on + strand, within GFF3640 at 504.910 kb on + strand, within GFF3640 at 504.911 kb on - strand, within GFF3640 at 504.911 kb on - strand, within GFF3640 at 504.935 kb on - strand, within GFF3640 at 504.969 kb on + strand, within GFF3640 at 504.969 kb on + strand, within GFF3640 at 504.969 kb on + strand, within GFF3640 at 504.969 kb on + strand, within GFF3640 at 505.015 kb on + strand, within GFF3640 at 505.016 kb on - strand, within GFF3640 at 505.038 kb on + strand, within GFF3640 at 505.039 kb on + strand, within GFF3640 at 505.039 kb on + strand, within GFF3640 at 505.039 kb on + strand, within GFF3640 at 505.039 kb on + strand, within GFF3640 at 505.040 kb on - strand, within GFF3640 at 505.040 kb on - strand, within GFF3640 at 505.040 kb on - strand, within GFF3640 at 505.040 kb on - strand, within GFF3640 at 505.040 kb on - strand, within GFF3640 at 505.069 kb on + strand, within GFF3640 at 505.070 kb on - strand, within GFF3640 at 505.070 kb on - strand, within GFF3640 at 505.129 kb on + strand, within GFF3640 at 505.129 kb on + strand, within GFF3640 at 505.129 kb on + strand, within GFF3640 at 505.129 kb on + strand, within GFF3640 at 505.130 kb on - strand, within GFF3640 at 505.130 kb on - strand, within GFF3640 at 505.130 kb on - strand, within GFF3640 at 505.130 kb on - strand, within GFF3640 at 505.136 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.293 kb on + strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.294 kb on - strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.295 kb on + strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.296 kb on - strand, within GFF3640 at 505.304 kb on - strand, within GFF3640 at 505.355 kb on + strand, within GFF3640 at 505.355 kb on + strand, within GFF3640 at 505.356 kb on - strand, within GFF3640 at 505.356 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.538 kb on + strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.586 kb on + strand, within GFF3640 at 505.770 kb on + strand, within GFF3640 at 505.771 kb on - strand, within GFF3640 at 505.776 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.851 kb on + strand, within GFF3640 at 505.921 kb on + strand at 505.922 kb on - strand at 505.990 kb on + strand at 505.991 kb on - strand at 505.991 kb on - strand at 505.991 kb on - strand at 506.004 kb on - strand at 506.008 kb on + strand at 506.009 kb on - strand at 506.030 kb on + strand at 506.031 kb on - strand at 506.075 kb on + strand at 506.076 kb on - strand at 506.080 kb on - strand at 506.080 kb on - strand at 506.115 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.183 kb on + strand at 506.183 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.213 kb on - strand at 506.216 kb on - strand at 506.246 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.281 kb on - strand at 506.293 kb on + strand at 506.294 kb on - strand at 506.298 kb on - strand at 506.298 kb on - strand at 506.298 kb on - strand at 506.348 kb on + strand at 506.356 kb on - strand at 506.390 kb on - strand at 506.471 kb on + strand at 506.507 kb on + strand at 506.508 kb on - strand at 506.510 kb on + strand at 506.510 kb on + strand at 506.510 kb on + strand at 506.511 kb on - strand, within GFF3641 at 506.567 kb on - strand, within GFF3641 at 506.652 kb on - strand, within GFF3641 at 506.704 kb on - strand, within GFF3641 at 506.704 kb on - strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.733 kb on - strand, within GFF3641 at 506.733 kb on - strand, within GFF3641 at 506.745 kb on + strand, within GFF3641 at 506.746 kb on - strand, within GFF3641 at 506.808 kb on - strand, within GFF3641 at 506.808 kb on - strand, within GFF3641 at 506.813 kb on + strand, within GFF3641 at 506.814 kb on - strand, within GFF3641 at 506.822 kb on + strand, within GFF3641 at 506.824 kb on + strand, within GFF3641 at 506.825 kb on - strand, within GFF3641 at 506.825 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.968 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.988 kb on - strand, within GFF3641 at 507.039 kb on + strand, within GFF3641 at 507.039 kb on + strand, within GFF3641 at 507.039 kb on + strand, within GFF3641
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 503,539 - GFF3639 0.61 -0.3 503,805 + GFF3639 0.81 -1.4 503,805 + GFF3639 0.81 -0.7 503,806 - GFF3639 0.81 -0.4 503,806 - GFF3639 0.81 -0.2 503,865 + GFF3639 0.85 -0.4 503,928 + GFF3639 0.90 -0.7 503,928 + GFF3639 0.90 -0.0 503,929 - GFF3639 0.90 -0.5 503,929 - GFF3639 0.90 +0.3 503,929 - GFF3639 0.90 +0.1 504,030 + -0.6 504,030 + +0.8 504,222 + -0.3 504,230 + -0.7 504,230 + -0.9 504,231 - +0.3 504,340 + -0.2 504,342 + -0.5 504,350 + -1.7 504,350 + +0.1 504,351 - -1.0 504,351 - -0.7 504,374 + +0.7 504,375 - +0.5 504,375 - -0.2 504,447 - -0.1 504,449 - -0.0 504,462 + -1.2 504,463 - -1.1 504,484 - +0.0 504,484 - -0.3 504,506 + -0.8 504,509 - -0.7 504,539 + -1.1 504,539 + +0.1 504,539 + +0.3 504,549 - +0.4 504,607 - +0.1 504,607 - +0.3 504,616 + -0.7 504,656 + GFF3640 0.12 -0.1 504,657 - GFF3640 0.12 -0.7 504,657 - GFF3640 0.12 +0.1 504,657 - GFF3640 0.12 -0.2 504,669 + GFF3640 0.13 -1.0 504,770 + GFF3640 0.19 -1.4 504,771 - GFF3640 0.19 -0.3 504,773 - GFF3640 0.19 -0.7 504,788 + GFF3640 0.20 -1.2 504,789 - GFF3640 0.20 -0.1 504,798 - GFF3640 0.21 -0.6 504,868 - GFF3640 0.25 -1.1 504,908 + GFF3640 0.28 -1.1 504,909 - GFF3640 0.28 -0.6 504,909 - GFF3640 0.28 -0.4 504,909 - GFF3640 0.28 -0.1 504,909 - GFF3640 0.28 -1.2 504,910 + GFF3640 0.28 -1.0 504,910 + GFF3640 0.28 -2.2 504,911 - GFF3640 0.28 +0.4 504,911 - GFF3640 0.28 -0.8 504,935 - GFF3640 0.30 -0.6 504,969 + GFF3640 0.32 -0.2 504,969 + GFF3640 0.32 -1.2 504,969 + GFF3640 0.32 -1.4 504,969 + GFF3640 0.32 -1.2 505,015 + GFF3640 0.35 -1.4 505,016 - GFF3640 0.35 -0.9 505,038 + GFF3640 0.36 -1.2 505,039 + GFF3640 0.36 -0.7 505,039 + GFF3640 0.36 -1.1 505,039 + GFF3640 0.36 +0.4 505,039 + GFF3640 0.36 -1.4 505,040 - GFF3640 0.36 -0.8 505,040 - GFF3640 0.36 -0.7 505,040 - GFF3640 0.36 -0.0 505,040 - GFF3640 0.36 -0.1 505,040 - GFF3640 0.36 +0.6 505,069 + GFF3640 0.38 -3.2 505,070 - GFF3640 0.38 +0.2 505,070 - GFF3640 0.38 -1.0 505,129 + GFF3640 0.42 -0.5 505,129 + GFF3640 0.42 -0.6 505,129 + GFF3640 0.42 -1.0 505,129 + GFF3640 0.42 -0.8 505,130 - GFF3640 0.42 -0.4 505,130 - GFF3640 0.42 -0.2 505,130 - GFF3640 0.42 -0.3 505,130 - GFF3640 0.42 -0.4 505,136 + GFF3640 0.42 -0.3 505,293 + GFF3640 0.52 -1.0 505,293 + GFF3640 0.52 +0.4 505,293 + GFF3640 0.52 +0.8 505,293 + GFF3640 0.52 +0.2 505,293 + GFF3640 0.52 -1.2 505,293 + GFF3640 0.52 +0.1 505,294 - GFF3640 0.52 -1.2 505,294 - GFF3640 0.52 -1.1 505,294 - GFF3640 0.52 -0.2 505,294 - GFF3640 0.52 -0.7 505,294 - GFF3640 0.52 -1.0 505,294 - GFF3640 0.52 -0.9 505,294 - GFF3640 0.52 -0.3 505,294 - GFF3640 0.52 -0.4 505,295 + GFF3640 0.53 +0.2 505,295 + GFF3640 0.53 -0.9 505,295 + GFF3640 0.53 -2.6 505,295 + GFF3640 0.53 -1.4 505,295 + GFF3640 0.53 -3.3 505,295 + GFF3640 0.53 -1.2 505,295 + GFF3640 0.53 -0.8 505,295 + GFF3640 0.53 -1.7 505,295 + GFF3640 0.53 -0.8 505,295 + GFF3640 0.53 -1.8 505,295 + GFF3640 0.53 -2.3 505,295 + GFF3640 0.53 -1.3 505,295 + GFF3640 0.53 -0.9 505,295 + GFF3640 0.53 -0.5 505,295 + GFF3640 0.53 -0.1 505,295 + GFF3640 0.53 -0.8 505,296 - GFF3640 0.53 -1.7 505,296 - GFF3640 0.53 -1.4 505,296 - GFF3640 0.53 -1.3 505,296 - GFF3640 0.53 +0.1 505,296 - GFF3640 0.53 -0.1 505,296 - GFF3640 0.53 +1.1 505,296 - GFF3640 0.53 -0.2 505,296 - GFF3640 0.53 -1.0 505,296 - GFF3640 0.53 -0.4 505,296 - GFF3640 0.53 -0.6 505,296 - GFF3640 0.53 -0.9 505,296 - GFF3640 0.53 +0.1 505,296 - GFF3640 0.53 -0.6 505,304 - GFF3640 0.53 +0.1 505,355 + GFF3640 0.56 -0.7 505,355 + GFF3640 0.56 -0.8 505,356 - GFF3640 0.56 -0.5 505,356 - GFF3640 0.56 +0.0 505,409 - GFF3640 0.60 -1.4 505,409 - GFF3640 0.60 -0.4 505,409 - GFF3640 0.60 -1.7 505,409 - GFF3640 0.60 -0.7 505,538 + GFF3640 0.68 -0.9 505,539 - GFF3640 0.68 -1.1 505,539 - GFF3640 0.68 -2.0 505,539 - GFF3640 0.68 -0.9 505,586 + GFF3640 0.71 -0.3 505,770 + GFF3640 0.83 -1.2 505,771 - GFF3640 0.83 -0.2 505,776 - GFF3640 0.83 -0.8 505,801 - GFF3640 0.85 -0.6 505,801 - GFF3640 0.85 -0.9 505,801 - GFF3640 0.85 -0.2 505,851 + GFF3640 0.88 -1.6 505,921 + -0.1 505,922 - +0.1 505,990 + -1.4 505,991 - -0.4 505,991 - -2.0 505,991 - -1.4 506,004 - -0.4 506,008 + -0.9 506,009 - -1.2 506,030 + -0.4 506,031 - -1.6 506,075 + -0.9 506,076 - -0.6 506,080 - -0.7 506,080 - -1.6 506,115 + +0.1 506,163 + +0.1 506,163 + -0.4 506,163 + -0.3 506,163 + -1.4 506,164 - -1.5 506,164 - -0.3 506,164 - -0.9 506,183 + -0.3 506,183 + +0.6 506,212 + +0.1 506,212 + -0.8 506,212 + -0.2 506,212 + -0.7 506,213 - -0.9 506,216 - -0.4 506,246 + +0.1 506,280 + -0.3 506,280 + -0.2 506,280 + -1.3 506,281 - -0.5 506,293 + +0.1 506,294 - -1.7 506,298 - -1.3 506,298 - -1.4 506,298 - -0.2 506,348 + -0.4 506,356 - -1.9 506,390 - +0.5 506,471 + +1.1 506,507 + -0.1 506,508 - -0.3 506,510 + +0.4 506,510 + +0.2 506,510 + -0.3 506,511 - GFF3641 0.10 +0.5 506,567 - GFF3641 0.15 +0.2 506,652 - GFF3641 0.22 +1.1 506,704 - GFF3641 0.26 +0.9 506,704 - GFF3641 0.26 +0.3 506,732 + GFF3641 0.29 +0.6 506,732 + GFF3641 0.29 +0.8 506,732 + GFF3641 0.29 +1.6 506,732 + GFF3641 0.29 +1.0 506,733 - GFF3641 0.29 +0.4 506,733 - GFF3641 0.29 +0.2 506,745 + GFF3641 0.30 -0.6 506,746 - GFF3641 0.30 +0.6 506,808 - GFF3641 0.35 +0.6 506,808 - GFF3641 0.35 +0.4 506,813 + GFF3641 0.36 +1.1 506,814 - GFF3641 0.36 +0.6 506,822 + GFF3641 0.36 +1.1 506,824 + GFF3641 0.37 +0.7 506,825 - GFF3641 0.37 +0.4 506,825 - GFF3641 0.37 +0.4 506,858 - GFF3641 0.39 +0.2 506,858 - GFF3641 0.39 -0.3 506,858 - GFF3641 0.39 +1.5 506,858 - GFF3641 0.39 +0.8 506,858 - GFF3641 0.39 +0.5 506,858 - GFF3641 0.39 +1.4 506,968 + GFF3641 0.49 +1.2 506,976 + GFF3641 0.49 +0.5 506,976 + GFF3641 0.49 +1.1 506,976 + GFF3641 0.49 +1.1 506,976 + GFF3641 0.49 +0.8 506,976 + GFF3641 0.49 -0.3 506,977 - GFF3641 0.50 -1.2 506,977 - GFF3641 0.50 +0.6 506,977 - GFF3641 0.50 +1.0 506,977 - GFF3641 0.50 +1.1 506,988 - GFF3641 0.50 +1.3 507,039 + GFF3641 0.55 +1.7 507,039 + GFF3641 0.55 +0.9 507,039 + GFF3641 0.55 +1.0
Or see this region's nucleotide sequence