Strain Fitness in Xanthobacter sp. DMC5 around GFF3637

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3635 and GFF3636 are separated by 12 nucleotidesGFF3636 and GFF3637 overlap by 1 nucleotidesGFF3637 and GFF3638 overlap by 1 nucleotides GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844 GFF3635 GFF3636 - hypothetical protein, at 500,857 to 501,129 GFF3636 GFF3637 - hypothetical protein, at 501,129 to 501,458 GFF3637 GFF3638 - hypothetical protein, at 501,458 to 502,444 GFF3638 Position (kb) 501 502Strain fitness (log2 ratio) -1 0 1 2at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.288 kb on + strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.299 kb on - strand, within GFF3635at 500.426 kb on + strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.490 kb on - strand, within GFF3635at 500.490 kb on - strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 501.274 kb on - strand, within GFF3637at 501.274 kb on - strand, within GFF3637at 501.392 kb on - strand, within GFF3637at 501.507 kb on + strandat 501.507 kb on + strandat 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.675 kb on - strand, within GFF3638at 501.915 kb on + strand, within GFF3638at 501.915 kb on + strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.923 kb on - strand, within GFF3638at 502.009 kb on + strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.213 kb on + strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.233 kb on - strand, within GFF3638at 502.444 kb on + strandat 502.444 kb on + strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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500,229 - GFF3635 0.75 -0.3
500,229 - GFF3635 0.75 -0.1
500,229 - GFF3635 0.75 -0.6
500,229 - GFF3635 0.75 +0.7
500,229 - GFF3635 0.75 +0.4
500,232 + GFF3635 0.75 -1.0
500,232 + GFF3635 0.75 -0.2
500,232 + GFF3635 0.75 +0.0
500,232 + GFF3635 0.75 +0.1
500,233 - GFF3635 0.75 +0.1
500,233 - GFF3635 0.75 +0.1
500,233 - GFF3635 0.75 +0.9
500,233 - GFF3635 0.75 -1.3
500,233 - GFF3635 0.75 -0.0
500,233 - GFF3635 0.75 -0.4
500,233 - GFF3635 0.75 +1.3
500,288 + GFF3635 0.77 -0.0
500,289 - GFF3635 0.77 +0.3
500,289 - GFF3635 0.77 -0.2
500,289 - GFF3635 0.77 -0.4
500,299 - GFF3635 0.78 -0.6
500,426 + GFF3635 0.83 -0.2
500,427 - GFF3635 0.83 +0.1
500,427 - GFF3635 0.83 -0.5
500,427 - GFF3635 0.83 +0.3
500,490 - GFF3635 0.85 -0.0
500,490 - GFF3635 0.85 -0.1
500,585 + GFF3635 0.89 -0.0
500,585 + GFF3635 0.89 -0.7
500,598 + GFF3635 0.90 -0.1
500,598 + GFF3635 0.90 +0.8
500,598 + GFF3635 0.90 -0.1
500,742 + +0.1
500,742 + +2.0
500,742 + +0.3
500,742 + +1.4
500,743 - -0.4
500,743 - -0.6
500,743 - -0.6
500,795 + -0.1
500,795 + +0.6
500,795 + -0.2
500,796 - +0.4
500,796 - +0.6
500,796 - -0.1
500,825 + +1.0
500,825 + -1.3
500,825 + -0.8
500,825 + -0.2
501,274 - GFF3637 0.44 +0.3
501,274 - GFF3637 0.44 -0.3
501,392 - GFF3637 0.80 -0.7
501,507 + -0.1
501,507 + -0.5
501,674 + GFF3638 0.22 -0.0
501,674 + GFF3638 0.22 +0.0
501,674 + GFF3638 0.22 -0.2
501,675 - GFF3638 0.22 +1.0
501,915 + GFF3638 0.46 -1.1
501,915 + GFF3638 0.46 -0.3
501,916 - GFF3638 0.46 -0.4
501,916 - GFF3638 0.46 +0.6
501,916 - GFF3638 0.46 +0.9
501,922 + GFF3638 0.47 -0.3
501,922 + GFF3638 0.47 -0.2
501,922 + GFF3638 0.47 -0.3
501,923 - GFF3638 0.47 -0.1
502,009 + GFF3638 0.56 -0.6
502,010 - GFF3638 0.56 +0.5
502,010 - GFF3638 0.56 -0.4
502,010 - GFF3638 0.56 -0.2
502,063 - GFF3638 0.61 +0.3
502,063 - GFF3638 0.61 -0.8
502,213 + GFF3638 0.76 +0.4
502,214 - GFF3638 0.77 -0.9
502,214 - GFF3638 0.77 -0.8
502,233 - GFF3638 0.79 -0.7
502,444 + +0.0
502,444 + -0.8
502,445 - -1.0
502,445 - +0.1
502,445 - +0.3
502,445 - +0.3

Or see this region's nucleotide sequence