Strain Fitness in Xanthobacter sp. DMC5 around GFF3634

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3632 and GFF3633 overlap by 4 nucleotidesGFF3633 and GFF3634 are separated by 9 nucleotidesGFF3634 and GFF3635 overlap by 4 nucleotides GFF3632 - hypothetical protein, at 496,137 to 497,417 GFF3632 GFF3633 - hypothetical protein, at 497,414 to 497,674 GFF3633 GFF3634 - hypothetical protein, at 497,684 to 498,418 GFF3634 GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844 GFF3635 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1at 496.735 kb on + strand, within GFF3632at 496.735 kb on + strand, within GFF3632at 496.735 kb on + strand, within GFF3632at 496.735 kb on + strand, within GFF3632at 496.914 kb on + strand, within GFF3632at 496.914 kb on + strand, within GFF3632at 496.914 kb on + strand, within GFF3632at 496.914 kb on + strand, within GFF3632at 496.915 kb on - strand, within GFF3632at 496.915 kb on - strand, within GFF3632at 496.915 kb on - strand, within GFF3632at 497.440 kb on + strand, within GFF3633at 497.440 kb on + strand, within GFF3633at 497.441 kb on - strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.721 kb on + strandat 497.721 kb on + strandat 497.721 kb on + strandat 498.081 kb on + strand, within GFF3634at 498.081 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.121 kb on - strand, within GFF3634at 498.195 kb on + strand, within GFF3634at 498.196 kb on - strand, within GFF3634at 498.196 kb on - strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.330 kb on + strand, within GFF3634at 498.330 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.484 kb on + strandat 498.484 kb on + strandat 498.485 kb on - strandat 498.485 kb on - strandat 498.635 kb on + strandat 498.636 kb on - strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.639 kb on - strandat 498.639 kb on - strandat 498.705 kb on - strand, within GFF3635at 498.726 kb on + strand, within GFF3635at 498.751 kb on + strand, within GFF3635at 498.751 kb on + strand, within GFF3635at 498.776 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.778 kb on - strand, within GFF3635at 498.778 kb on - strand, within GFF3635at 498.803 kb on - strand, within GFF3635at 498.853 kb on + strand, within GFF3635at 498.853 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.978 kb on - strand, within GFF3635at 498.978 kb on - strand, within GFF3635at 499.103 kb on + strand, within GFF3635at 499.103 kb on + strand, within GFF3635at 499.104 kb on - strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.238 kb on + strand, within GFF3635

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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496,735 + GFF3632 0.47 -0.4
496,735 + GFF3632 0.47 +0.3
496,735 + GFF3632 0.47 -0.9
496,735 + GFF3632 0.47 -2.0
496,914 + GFF3632 0.61 -0.3
496,914 + GFF3632 0.61 +0.6
496,914 + GFF3632 0.61 +0.2
496,914 + GFF3632 0.61 -0.4
496,915 - GFF3632 0.61 +0.6
496,915 - GFF3632 0.61 +0.7
496,915 - GFF3632 0.61 +0.7
497,440 + GFF3633 0.10 -0.1
497,440 + GFF3633 0.10 -0.7
497,441 - GFF3633 0.10 +0.4
497,444 + GFF3633 0.11 -1.0
497,444 + GFF3633 0.11 +0.6
497,444 + GFF3633 0.11 +0.1
497,444 + GFF3633 0.11 -0.8
497,444 + GFF3633 0.11 -0.1
497,445 - GFF3633 0.12 -0.0
497,445 - GFF3633 0.12 +0.0
497,445 - GFF3633 0.12 -0.4
497,445 - GFF3633 0.12 +1.4
497,721 + +0.1
497,721 + -1.5
497,721 + -1.0
498,081 + GFF3634 0.54 +0.4
498,081 + GFF3634 0.54 +0.4
498,120 + GFF3634 0.59 -0.2
498,120 + GFF3634 0.59 +0.1
498,120 + GFF3634 0.59 -0.2
498,121 - GFF3634 0.59 -0.8
498,195 + GFF3634 0.70 +0.1
498,196 - GFF3634 0.70 +0.5
498,196 - GFF3634 0.70 -0.7
498,315 + GFF3634 0.86 -0.6
498,315 + GFF3634 0.86 +0.8
498,315 + GFF3634 0.86 +0.3
498,316 - GFF3634 0.86 +0.1
498,316 - GFF3634 0.86 +0.2
498,316 - GFF3634 0.86 +0.7
498,330 + GFF3634 0.88 -0.4
498,330 + GFF3634 0.88 +0.9
498,339 + GFF3634 0.89 -1.2
498,339 + GFF3634 0.89 -0.3
498,339 + GFF3634 0.89 -0.3
498,484 + -1.8
498,484 + -1.4
498,485 - +1.4
498,485 - +0.4
498,635 + -0.5
498,636 - +0.8
498,638 + +0.4
498,638 + -0.9
498,638 + +0.3
498,638 + -0.4
498,638 + -1.7
498,638 + -0.4
498,638 + -0.9
498,639 - +0.5
498,639 - +0.7
498,705 - GFF3635 0.12 +0.1
498,726 + GFF3635 0.13 -0.6
498,751 + GFF3635 0.14 -0.0
498,751 + GFF3635 0.14 -0.9
498,776 + GFF3635 0.15 -0.3
498,777 + GFF3635 0.15 +1.1
498,777 + GFF3635 0.15 -1.1
498,777 + GFF3635 0.15 -0.3
498,778 - GFF3635 0.15 -0.4
498,778 - GFF3635 0.15 -0.0
498,803 - GFF3635 0.16 -0.3
498,853 + GFF3635 0.18 -0.1
498,853 + GFF3635 0.18 -0.3
498,977 + GFF3635 0.23 +0.3
498,977 + GFF3635 0.23 -1.0
498,977 + GFF3635 0.23 -0.8
498,977 + GFF3635 0.23 +0.7
498,977 + GFF3635 0.23 +0.5
498,977 + GFF3635 0.23 -1.0
498,977 + GFF3635 0.23 +0.0
498,978 - GFF3635 0.23 -0.3
498,978 - GFF3635 0.23 +0.0
499,103 + GFF3635 0.28 -0.3
499,103 + GFF3635 0.28 -0.8
499,104 - GFF3635 0.28 +0.4
499,212 + GFF3635 0.33 +0.0
499,212 + GFF3635 0.33 -1.1
499,212 + GFF3635 0.33 -0.7
499,212 + GFF3635 0.33 -0.6
499,213 - GFF3635 0.33 +0.7
499,213 - GFF3635 0.33 -0.1
499,213 - GFF3635 0.33 +0.2
499,213 - GFF3635 0.33 +0.3
499,238 + GFF3635 0.34 -0.3

Or see this region's nucleotide sequence