Strain Fitness in Xanthobacter sp. DMC5 around GFF3630

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3629 and GFF3630 overlap by 4 nucleotidesGFF3630 and GFF3631 overlap by 4 nucleotidesGFF3631 and GFF3632 overlap by 4 nucleotides GFF3629 - hypothetical protein, at 493,158 to 494,405 GFF3629 GFF3630 - hypothetical protein, at 494,402 to 495,454 GFF3630 GFF3631 - hypothetical protein, at 495,451 to 496,140 GFF3631 GFF3632 - hypothetical protein, at 496,137 to 497,417 GFF3632 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1at 493.411 kb on + strand, within GFF3629at 493.412 kb on - strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.500 kb on - strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.667 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.708 kb on - strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 494.113 kb on + strand, within GFF3629at 494.113 kb on + strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.168 kb on - strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.212 kb on + strand, within GFF3629at 494.213 kb on - strand, within GFF3629at 494.213 kb on - strand, within GFF3629at 494.405 kb on + strandat 494.405 kb on + strandat 494.405 kb on + strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.406 kb on - strandat 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.508 kb on + strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.509 kb on - strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.526 kb on + strand, within GFF3630at 494.645 kb on + strand, within GFF3630at 494.645 kb on + strand, within GFF3630at 494.646 kb on - strand, within GFF3630at 494.646 kb on - strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.767 kb on + strand, within GFF3630at 494.768 kb on - strand, within GFF3630at 494.785 kb on - strand, within GFF3630at 494.785 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.809 kb on - strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.841 kb on + strand, within GFF3630at 494.857 kb on + strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.052 kb on - strand, within GFF3630at 495.084 kb on + strand, within GFF3630at 495.084 kb on + strand, within GFF3630at 495.185 kb on + strand, within GFF3630at 495.185 kb on + strand, within GFF3630at 495.306 kb on + strand, within GFF3630at 495.491 kb on + strandat 495.491 kb on + strandat 495.750 kb on + strand, within GFF3631at 495.750 kb on + strand, within GFF3631at 495.750 kb on + strand, within GFF3631at 495.750 kb on + strand, within GFF3631at 495.752 kb on + strand, within GFF3631at 495.752 kb on + strand, within GFF3631at 495.752 kb on + strand, within GFF3631at 495.753 kb on - strand, within GFF3631at 495.753 kb on - strand, within GFF3631at 495.758 kb on + strand, within GFF3631at 495.759 kb on - strand, within GFF3631at 495.759 kb on - strand, within GFF3631at 495.759 kb on - strand, within GFF3631at 495.759 kb on - strand, within GFF3631at 495.759 kb on - strand, within GFF3631at 495.866 kb on + strand, within GFF3631at 495.866 kb on + strand, within GFF3631at 496.079 kb on + strandat 496.079 kb on + strandat 496.079 kb on + strandat 496.080 kb on - strandat 496.080 kb on - strandat 496.080 kb on - strandat 496.109 kb on + strandat 496.109 kb on + strandat 496.278 kb on + strand, within GFF3632

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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493,411 + GFF3629 0.20 -0.8
493,412 - GFF3629 0.20 -0.1
493,438 + GFF3629 0.22 -0.7
493,438 + GFF3629 0.22 -0.2
493,438 + GFF3629 0.22 -0.4
493,438 + GFF3629 0.22 +0.1
493,438 + GFF3629 0.22 -0.5
493,438 + GFF3629 0.22 +0.0
493,438 + GFF3629 0.22 -0.3
493,438 + GFF3629 0.22 -0.5
493,439 - GFF3629 0.23 +0.6
493,439 - GFF3629 0.23 +0.8
493,439 - GFF3629 0.23 +0.3
493,500 - GFF3629 0.27 +0.9
493,555 + GFF3629 0.32 -0.4
493,555 + GFF3629 0.32 +1.1
493,555 + GFF3629 0.32 +1.3
493,555 + GFF3629 0.32 +0.4
493,556 - GFF3629 0.32 -0.8
493,556 - GFF3629 0.32 -0.5
493,619 + GFF3629 0.37 -0.7
493,619 + GFF3629 0.37 -1.1
493,620 - GFF3629 0.37 +0.2
493,620 - GFF3629 0.37 +0.1
493,667 + GFF3629 0.41 -0.0
493,707 + GFF3629 0.44 -0.1
493,707 + GFF3629 0.44 +0.0
493,707 + GFF3629 0.44 -0.7
493,707 + GFF3629 0.44 +0.4
493,707 + GFF3629 0.44 -0.1
493,707 + GFF3629 0.44 -0.5
493,707 + GFF3629 0.44 -0.6
493,708 - GFF3629 0.44 -0.1
493,751 + GFF3629 0.48 +1.1
493,751 + GFF3629 0.48 +0.7
493,751 + GFF3629 0.48 +0.2
493,751 + GFF3629 0.48 +0.0
493,751 + GFF3629 0.48 +0.3
493,751 + GFF3629 0.48 +1.1
493,751 + GFF3629 0.48 +0.1
493,752 - GFF3629 0.48 -0.1
493,752 - GFF3629 0.48 -0.7
493,752 - GFF3629 0.48 -0.6
493,752 - GFF3629 0.48 +0.3
493,884 + GFF3629 0.58 -0.5
493,884 + GFF3629 0.58 +0.3
493,885 - GFF3629 0.58 -1.2
493,885 - GFF3629 0.58 +0.7
494,113 + GFF3629 0.77 -0.4
494,113 + GFF3629 0.77 +0.1
494,168 - GFF3629 0.81 -1.2
494,168 - GFF3629 0.81 -0.4
494,168 - GFF3629 0.81 -0.2
494,168 - GFF3629 0.81 +0.1
494,212 + GFF3629 0.84 -1.4
494,212 + GFF3629 0.84 +0.5
494,212 + GFF3629 0.84 -1.2
494,213 - GFF3629 0.85 -0.3
494,213 - GFF3629 0.85 -1.4
494,405 + +0.0
494,405 + -0.3
494,405 + -1.5
494,406 - -0.3
494,406 - -0.4
494,406 - +0.6
494,406 - +0.9
494,508 + GFF3630 0.10 +0.3
494,508 + GFF3630 0.10 +0.4
494,508 + GFF3630 0.10 +0.3
494,508 + GFF3630 0.10 -0.4
494,508 + GFF3630 0.10 -1.2
494,508 + GFF3630 0.10 -0.2
494,508 + GFF3630 0.10 -0.2
494,508 + GFF3630 0.10 -0.4
494,508 + GFF3630 0.10 -0.3
494,509 - GFF3630 0.10 -0.8
494,509 - GFF3630 0.10 +0.3
494,509 - GFF3630 0.10 +0.9
494,509 - GFF3630 0.10 +0.2
494,509 - GFF3630 0.10 +0.7
494,509 - GFF3630 0.10 +0.8
494,509 - GFF3630 0.10 -0.5
494,526 + GFF3630 0.12 -0.1
494,526 + GFF3630 0.12 -0.9
494,526 + GFF3630 0.12 +0.4
494,645 + GFF3630 0.23 -0.2
494,645 + GFF3630 0.23 +0.3
494,646 - GFF3630 0.23 +0.5
494,646 - GFF3630 0.23 -1.0
494,767 + GFF3630 0.35 -0.0
494,767 + GFF3630 0.35 -1.0
494,767 + GFF3630 0.35 -0.7
494,767 + GFF3630 0.35 -0.8
494,768 - GFF3630 0.35 -0.1
494,785 - GFF3630 0.36 -0.8
494,785 - GFF3630 0.36 -1.4
494,809 - GFF3630 0.39 -0.3
494,809 - GFF3630 0.39 -1.2
494,809 - GFF3630 0.39 -1.2
494,841 + GFF3630 0.42 +0.3
494,841 + GFF3630 0.42 -0.6
494,841 + GFF3630 0.42 +0.2
494,841 + GFF3630 0.42 -1.0
494,841 + GFF3630 0.42 -0.2
494,857 + GFF3630 0.43 +1.4
495,052 - GFF3630 0.62 +0.1
495,052 - GFF3630 0.62 +0.6
495,052 - GFF3630 0.62 +0.2
495,084 + GFF3630 0.65 +0.2
495,084 + GFF3630 0.65 -1.0
495,185 + GFF3630 0.74 -0.6
495,185 + GFF3630 0.74 +0.6
495,306 + GFF3630 0.86 +0.0
495,491 + -0.4
495,491 + +0.4
495,750 + GFF3631 0.43 +0.4
495,750 + GFF3631 0.43 +0.3
495,750 + GFF3631 0.43 +0.6
495,750 + GFF3631 0.43 +0.7
495,752 + GFF3631 0.44 -1.3
495,752 + GFF3631 0.44 +0.1
495,752 + GFF3631 0.44 -0.3
495,753 - GFF3631 0.44 -0.5
495,753 - GFF3631 0.44 +0.6
495,758 + GFF3631 0.44 +0.3
495,759 - GFF3631 0.45 -0.5
495,759 - GFF3631 0.45 -0.2
495,759 - GFF3631 0.45 -0.2
495,759 - GFF3631 0.45 +0.0
495,759 - GFF3631 0.45 +1.1
495,866 + GFF3631 0.60 -0.3
495,866 + GFF3631 0.60 -0.4
496,079 + +0.0
496,079 + -0.9
496,079 + +0.0
496,080 - -0.1
496,080 - -0.5
496,080 - +1.1
496,109 + -1.0
496,109 + -0.0
496,278 + GFF3632 0.11 -1.9

Or see this region's nucleotide sequence