Strain Fitness in Xanthobacter sp. DMC5 around GFF3628

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3627 and GFF3628 are separated by 7 nucleotidesGFF3628 and GFF3629 are separated by 1 nucleotides GFF3627 - HTH-type transcriptional regulator GltC, at 492,007 to 492,921 GFF3627 GFF3628 - hypothetical protein, at 492,929 to 493,156 GFF3628 GFF3629 - hypothetical protein, at 493,158 to 494,405 GFF3629 Position (kb) 492 493 494Strain fitness (log2 ratio) -2 -1 0 1at 492.135 kb on - strand, within GFF3627at 492.167 kb on + strand, within GFF3627at 492.172 kb on - strand, within GFF3627at 492.173 kb on + strand, within GFF3627at 492.201 kb on + strand, within GFF3627at 492.250 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.303 kb on + strand, within GFF3627at 492.304 kb on - strand, within GFF3627at 492.305 kb on + strand, within GFF3627at 492.306 kb on - strand, within GFF3627at 492.344 kb on + strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.433 kb on - strand, within GFF3627at 492.465 kb on - strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.640 kb on + strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.706 kb on + strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.754 kb on - strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.804 kb on - strand, within GFF3627at 492.891 kb on + strandat 492.891 kb on + strandat 492.892 kb on - strandat 492.919 kb on + strandat 492.920 kb on - strandat 492.937 kb on + strandat 492.937 kb on + strandat 492.938 kb on - strandat 493.062 kb on + strand, within GFF3628at 493.062 kb on + strand, within GFF3628at 493.062 kb on + strand, within GFF3628at 493.063 kb on - strand, within GFF3628at 493.063 kb on - strand, within GFF3628at 493.169 kb on - strandat 493.169 kb on - strandat 493.169 kb on - strandat 493.245 kb on - strandat 493.411 kb on + strand, within GFF3629at 493.412 kb on - strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.438 kb on + strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.439 kb on - strand, within GFF3629at 493.500 kb on - strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.555 kb on + strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.556 kb on - strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.619 kb on + strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.620 kb on - strand, within GFF3629at 493.667 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.707 kb on + strand, within GFF3629at 493.708 kb on - strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.751 kb on + strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.752 kb on - strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.884 kb on + strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 493.885 kb on - strand, within GFF3629at 494.113 kb on + strand, within GFF3629at 494.113 kb on + strand, within GFF3629

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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492,135 - GFF3627 0.14 -0.1
492,167 + GFF3627 0.17 +0.4
492,172 - GFF3627 0.18 +0.4
492,173 + GFF3627 0.18 -0.5
492,201 + GFF3627 0.21 -0.2
492,250 - GFF3627 0.27 +0.7
492,302 - GFF3627 0.32 +0.3
492,302 - GFF3627 0.32 -0.1
492,302 - GFF3627 0.32 +0.1
492,302 - GFF3627 0.32 -0.5
492,302 - GFF3627 0.32 +0.3
492,302 - GFF3627 0.32 -1.0
492,303 + GFF3627 0.32 -0.4
492,304 - GFF3627 0.32 -0.1
492,305 + GFF3627 0.33 -0.5
492,306 - GFF3627 0.33 -0.2
492,344 + GFF3627 0.37 -0.4
492,365 - GFF3627 0.39 -0.3
492,365 - GFF3627 0.39 +0.0
492,423 + GFF3627 0.45 +0.1
492,423 + GFF3627 0.45 +0.0
492,424 - GFF3627 0.46 +0.4
492,424 - GFF3627 0.46 +0.7
492,424 - GFF3627 0.46 -1.0
492,427 - GFF3627 0.46 +0.9
492,427 - GFF3627 0.46 -0.1
492,433 - GFF3627 0.47 -0.1
492,465 - GFF3627 0.50 -2.4
492,606 + GFF3627 0.65 +0.1
492,606 + GFF3627 0.65 +0.1
492,606 + GFF3627 0.65 -1.3
492,606 + GFF3627 0.65 +0.1
492,606 + GFF3627 0.65 -0.9
492,607 - GFF3627 0.66 -0.1
492,607 - GFF3627 0.66 -0.3
492,607 - GFF3627 0.66 +0.9
492,612 + GFF3627 0.66 +0.9
492,612 + GFF3627 0.66 -0.5
492,613 - GFF3627 0.66 +1.3
492,613 - GFF3627 0.66 +0.2
492,613 - GFF3627 0.66 +0.0
492,640 + GFF3627 0.69 +0.1
492,641 - GFF3627 0.69 -0.6
492,641 - GFF3627 0.69 +1.0
492,641 - GFF3627 0.69 -0.9
492,706 + GFF3627 0.76 +0.4
492,707 - GFF3627 0.77 +0.1
492,707 - GFF3627 0.77 -0.7
492,707 - GFF3627 0.77 -1.2
492,707 - GFF3627 0.77 -0.5
492,707 - GFF3627 0.77 +1.4
492,707 - GFF3627 0.77 -0.2
492,717 + GFF3627 0.78 +0.6
492,717 + GFF3627 0.78 -0.7
492,718 - GFF3627 0.78 +0.7
492,718 - GFF3627 0.78 -0.6
492,754 - GFF3627 0.82 +0.6
492,793 + GFF3627 0.86 +0.2
492,793 + GFF3627 0.86 -0.1
492,794 - GFF3627 0.86 -0.3
492,794 - GFF3627 0.86 +0.2
492,803 + GFF3627 0.87 -0.5
492,803 + GFF3627 0.87 -0.2
492,804 - GFF3627 0.87 -0.5
492,891 + +0.9
492,891 + -2.2
492,892 - +0.1
492,919 + -0.6
492,920 - -1.1
492,937 + -0.1
492,937 + +0.1
492,938 - -0.1
493,062 + GFF3628 0.58 +0.8
493,062 + GFF3628 0.58 -0.5
493,062 + GFF3628 0.58 +0.5
493,063 - GFF3628 0.59 -0.7
493,063 - GFF3628 0.59 -0.4
493,169 - -1.2
493,169 - -0.3
493,169 - +0.4
493,245 - -0.7
493,411 + GFF3629 0.20 -0.8
493,412 - GFF3629 0.20 -0.1
493,438 + GFF3629 0.22 -0.7
493,438 + GFF3629 0.22 -0.2
493,438 + GFF3629 0.22 -0.4
493,438 + GFF3629 0.22 +0.1
493,438 + GFF3629 0.22 -0.5
493,438 + GFF3629 0.22 +0.0
493,438 + GFF3629 0.22 -0.3
493,438 + GFF3629 0.22 -0.5
493,439 - GFF3629 0.23 +0.6
493,439 - GFF3629 0.23 +0.8
493,439 - GFF3629 0.23 +0.3
493,500 - GFF3629 0.27 +0.9
493,555 + GFF3629 0.32 -0.4
493,555 + GFF3629 0.32 +1.1
493,555 + GFF3629 0.32 +1.3
493,555 + GFF3629 0.32 +0.4
493,556 - GFF3629 0.32 -0.8
493,556 - GFF3629 0.32 -0.5
493,619 + GFF3629 0.37 -0.7
493,619 + GFF3629 0.37 -1.1
493,620 - GFF3629 0.37 +0.2
493,620 - GFF3629 0.37 +0.1
493,667 + GFF3629 0.41 -0.0
493,707 + GFF3629 0.44 -0.1
493,707 + GFF3629 0.44 +0.0
493,707 + GFF3629 0.44 -0.7
493,707 + GFF3629 0.44 +0.4
493,707 + GFF3629 0.44 -0.1
493,707 + GFF3629 0.44 -0.5
493,707 + GFF3629 0.44 -0.6
493,708 - GFF3629 0.44 -0.1
493,751 + GFF3629 0.48 +1.1
493,751 + GFF3629 0.48 +0.7
493,751 + GFF3629 0.48 +0.2
493,751 + GFF3629 0.48 +0.0
493,751 + GFF3629 0.48 +0.3
493,751 + GFF3629 0.48 +1.1
493,751 + GFF3629 0.48 +0.1
493,752 - GFF3629 0.48 -0.1
493,752 - GFF3629 0.48 -0.7
493,752 - GFF3629 0.48 -0.6
493,752 - GFF3629 0.48 +0.3
493,884 + GFF3629 0.58 -0.5
493,884 + GFF3629 0.58 +0.3
493,885 - GFF3629 0.58 -1.2
493,885 - GFF3629 0.58 +0.7
494,113 + GFF3629 0.77 -0.4
494,113 + GFF3629 0.77 +0.1

Or see this region's nucleotide sequence