Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF360 and GFF361 are separated by 6 nucleotides GFF361 and GFF362 are separated by 245 nucleotides GFF362 and GFF363 are separated by 127 nucleotides
GFF360 - hypothetical protein, at 371,175 to 372,896
GFF360
GFF361 - Iron uptake protein A2, at 372,903 to 373,928
GFF361
GFF362 - Bacterioferritin, at 374,174 to 374,656
GFF362
GFF363 - hypothetical protein, at 374,784 to 375,017
GFF363
Position (kb) 372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.169 kb on + strand, within GFF360 at 372.169 kb on + strand, within GFF360 at 372.170 kb on - strand, within GFF360 at 372.391 kb on + strand, within GFF360 at 372.392 kb on - strand, within GFF360 at 372.441 kb on + strand, within GFF360 at 372.441 kb on + strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.442 kb on - strand, within GFF360 at 372.535 kb on + strand, within GFF360 at 372.536 kb on - strand, within GFF360 at 372.536 kb on - strand, within GFF360 at 372.553 kb on + strand, within GFF360 at 372.553 kb on + strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 372.554 kb on - strand, within GFF360 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.066 kb on + strand, within GFF361 at 373.067 kb on - strand, within GFF361 at 373.067 kb on - strand, within GFF361 at 373.267 kb on + strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.268 kb on - strand, within GFF361 at 373.270 kb on + strand, within GFF361 at 373.271 kb on - strand, within GFF361 at 373.271 kb on - strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.414 kb on + strand, within GFF361 at 373.438 kb on + strand, within GFF361 at 373.439 kb on - strand, within GFF361 at 373.501 kb on + strand, within GFF361 at 373.502 kb on - strand, within GFF361 at 373.502 kb on - strand, within GFF361 at 373.570 kb on + strand, within GFF361 at 373.570 kb on + strand, within GFF361 at 373.835 kb on - strand at 373.997 kb on + strand at 373.998 kb on - strand at 374.211 kb on + strand at 374.211 kb on + strand at 374.211 kb on + strand at 374.316 kb on + strand, within GFF362 at 374.337 kb on + strand, within GFF362 at 374.337 kb on + strand, within GFF362 at 374.338 kb on - strand, within GFF362 at 374.584 kb on - strand, within GFF362 at 374.685 kb on + strand at 374.686 kb on - strand at 374.696 kb on - strand at 374.708 kb on - strand at 374.776 kb on + strand at 374.785 kb on + strand at 374.785 kb on + strand at 374.808 kb on - strand, within GFF363
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 372,169 + GFF360 0.58 -0.2 372,169 + GFF360 0.58 +0.4 372,170 - GFF360 0.58 -0.3 372,391 + GFF360 0.71 -0.1 372,392 - GFF360 0.71 -0.7 372,441 + GFF360 0.74 -0.7 372,441 + GFF360 0.74 -0.2 372,442 - GFF360 0.74 +0.5 372,442 - GFF360 0.74 -0.5 372,442 - GFF360 0.74 -0.0 372,442 - GFF360 0.74 +0.4 372,535 + GFF360 0.79 -0.6 372,536 - GFF360 0.79 -0.0 372,536 - GFF360 0.79 +0.1 372,553 + GFF360 0.80 +0.6 372,553 + GFF360 0.80 +0.0 372,554 - GFF360 0.80 -0.1 372,554 - GFF360 0.80 +0.6 372,554 - GFF360 0.80 +0.7 373,066 + GFF361 0.16 +0.4 373,066 + GFF361 0.16 -1.6 373,066 + GFF361 0.16 -0.4 373,066 + GFF361 0.16 -0.0 373,066 + GFF361 0.16 +0.1 373,067 - GFF361 0.16 -0.5 373,067 - GFF361 0.16 -0.2 373,267 + GFF361 0.35 +0.2 373,268 - GFF361 0.36 -0.7 373,268 - GFF361 0.36 -0.1 373,268 - GFF361 0.36 -1.4 373,268 - GFF361 0.36 -0.8 373,268 - GFF361 0.36 +1.9 373,268 - GFF361 0.36 +0.2 373,270 + GFF361 0.36 -0.7 373,271 - GFF361 0.36 +0.7 373,271 - GFF361 0.36 +0.0 373,414 + GFF361 0.50 +0.5 373,414 + GFF361 0.50 +0.0 373,414 + GFF361 0.50 +0.1 373,438 + GFF361 0.52 -0.1 373,439 - GFF361 0.52 -0.1 373,501 + GFF361 0.58 +0.3 373,502 - GFF361 0.58 -1.8 373,502 - GFF361 0.58 +0.3 373,570 + GFF361 0.65 +1.3 373,570 + GFF361 0.65 +0.3 373,835 - -0.1 373,997 + -0.1 373,998 - -0.0 374,211 + -0.1 374,211 + -0.2 374,211 + +0.2 374,316 + GFF362 0.29 +0.2 374,337 + GFF362 0.34 -0.5 374,337 + GFF362 0.34 +0.3 374,338 - GFF362 0.34 -1.2 374,584 - GFF362 0.85 -0.1 374,685 + +1.8 374,686 - +0.1 374,696 - -0.1 374,708 - +0.5 374,776 + +0.3 374,785 + +0.8 374,785 + -0.5 374,808 - GFF363 0.10 +0.2
Or see this region's nucleotide sequence