Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3601 and GFF3602 are separated by 526 nucleotides GFF3602 and GFF3603 overlap by 14 nucleotides GFF3603 and GFF3604 are separated by 166 nucleotides
GFF3601 - hypothetical protein, at 462,033 to 463,754
GFF3601
GFF3602 - hypothetical protein, at 464,281 to 465,393
GFF3602
GFF3603 - hypothetical protein, at 465,380 to 466,186
GFF3603
GFF3604 - hypothetical protein, at 466,353 to 466,805
GFF3604
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.396 kb on + strand, within GFF3601 at 463.568 kb on - strand, within GFF3601 at 463.568 kb on - strand, within GFF3601 at 463.593 kb on + strand at 463.593 kb on + strand at 463.593 kb on + strand at 463.593 kb on + strand at 463.594 kb on - strand at 463.594 kb on - strand at 463.594 kb on - strand at 463.594 kb on - strand at 463.594 kb on - strand at 463.626 kb on - strand at 463.704 kb on + strand at 463.704 kb on + strand at 463.809 kb on + strand at 463.822 kb on + strand at 463.823 kb on - strand at 463.823 kb on - strand at 463.823 kb on - strand at 463.823 kb on - strand at 463.834 kb on + strand at 463.869 kb on + strand at 463.869 kb on + strand at 463.870 kb on - strand at 463.870 kb on - strand at 463.870 kb on - strand at 463.871 kb on + strand at 463.871 kb on + strand at 463.871 kb on + strand at 463.872 kb on - strand at 463.872 kb on - strand at 463.881 kb on + strand at 463.882 kb on - strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.974 kb on - strand at 463.974 kb on - strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.115 kb on - strand at 464.115 kb on - strand at 464.237 kb on + strand at 464.238 kb on - strand at 464.250 kb on + strand at 464.274 kb on - strand at 464.274 kb on - strand at 464.300 kb on - strand at 464.341 kb on + strand at 464.341 kb on + strand at 464.341 kb on + strand at 464.415 kb on + strand, within GFF3602 at 464.578 kb on + strand, within GFF3602 at 464.631 kb on + strand, within GFF3602 at 464.794 kb on + strand, within GFF3602 at 464.955 kb on - strand, within GFF3602 at 464.965 kb on + strand, within GFF3602 at 465.091 kb on - strand, within GFF3602 at 465.118 kb on - strand, within GFF3602 at 465.118 kb on - strand, within GFF3602 at 465.118 kb on - strand, within GFF3602 at 465.137 kb on - strand, within GFF3602 at 465.302 kb on - strand at 465.455 kb on + strand at 465.600 kb on - strand, within GFF3603 at 465.638 kb on - strand, within GFF3603 at 465.667 kb on - strand, within GFF3603 at 465.776 kb on - strand, within GFF3603 at 465.951 kb on + strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.952 kb on - strand, within GFF3603 at 465.989 kb on + strand, within GFF3603 at 466.052 kb on + strand, within GFF3603 at 466.053 kb on - strand, within GFF3603 at 466.071 kb on - strand, within GFF3603 at 466.121 kb on + strand at 466.121 kb on + strand at 466.175 kb on + strand at 466.176 kb on - strand at 466.344 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 463,396 + GFF3601 0.79 -2.2 463,568 - GFF3601 0.89 +0.4 463,568 - GFF3601 0.89 -1.2 463,593 + -1.1 463,593 + +0.1 463,593 + -0.1 463,593 + +0.2 463,594 - +0.1 463,594 - -0.7 463,594 - -0.2 463,594 - -1.2 463,594 - +1.4 463,626 - -0.1 463,704 + -0.5 463,704 + -0.4 463,809 + -0.1 463,822 + -0.8 463,823 - +0.6 463,823 - +0.1 463,823 - +0.0 463,823 - -0.5 463,834 + -0.2 463,869 + -0.1 463,869 + -1.1 463,870 - -0.2 463,870 - -0.1 463,870 - +0.4 463,871 + +0.7 463,871 + +0.2 463,871 + +0.1 463,872 - -0.2 463,872 - -0.2 463,881 + +0.3 463,882 - -0.0 463,973 + +1.0 463,973 + +0.4 463,974 - -1.3 463,974 - -1.0 464,114 + -0.7 464,114 + -0.6 464,114 + +0.4 464,114 + -0.2 464,114 + +1.3 464,115 - -0.6 464,115 - -0.1 464,237 + +0.4 464,238 - +0.5 464,250 + +0.0 464,274 - -0.6 464,274 - +0.4 464,300 - -0.4 464,341 + -0.9 464,341 + -1.3 464,341 + -1.7 464,415 + GFF3602 0.12 -1.8 464,578 + GFF3602 0.27 -1.2 464,631 + GFF3602 0.31 -1.0 464,794 + GFF3602 0.46 -0.9 464,955 - GFF3602 0.61 -0.9 464,965 + GFF3602 0.61 +0.1 465,091 - GFF3602 0.73 +1.2 465,118 - GFF3602 0.75 -0.3 465,118 - GFF3602 0.75 -0.9 465,118 - GFF3602 0.75 -0.1 465,137 - GFF3602 0.77 -0.6 465,302 - -0.5 465,455 + -0.1 465,600 - GFF3603 0.27 -0.1 465,638 - GFF3603 0.32 -0.5 465,667 - GFF3603 0.36 +0.1 465,776 - GFF3603 0.49 +2.0 465,951 + GFF3603 0.71 -0.9 465,952 - GFF3603 0.71 -0.3 465,952 - GFF3603 0.71 +0.2 465,952 - GFF3603 0.71 +0.8 465,989 + GFF3603 0.75 +0.1 466,052 + GFF3603 0.83 +0.1 466,053 - GFF3603 0.83 -0.2 466,071 - GFF3603 0.86 -0.7 466,121 + -0.5 466,121 + -0.4 466,175 + -1.2 466,176 - -0.4 466,344 + +0.5
Or see this region's nucleotide sequence