Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3584 and GFF3585 are separated by 230 nucleotides GFF3585 and GFF3586 are separated by 66 nucleotides GFF3586 and GFF3587 are separated by 27 nucleotides GFF3587 and GFF3588 are separated by 86 nucleotides
GFF3584 - putative oxidoreductase YjmC, at 446,052 to 447,137
GFF3584
GFF3585 - hypothetical protein, at 447,368 to 448,408
GFF3585
GFF3586 - hypothetical protein, at 448,475 to 448,717
GFF3586
GFF3587 - hypothetical protein, at 448,745 to 449,299
GFF3587
GFF3588 - hypothetical protein, at 449,386 to 449,826
GFF3588
Position (kb) 447
448
449 Strain fitness (log2 ratio) -1
0
1 at 446.558 kb on - strand, within GFF3584 at 446.830 kb on + strand, within GFF3584 at 446.947 kb on + strand, within GFF3584 at 446.947 kb on + strand, within GFF3584 at 446.947 kb on + strand, within GFF3584 at 446.947 kb on + strand, within GFF3584 at 446.948 kb on - strand, within GFF3584 at 446.948 kb on - strand, within GFF3584 at 446.948 kb on - strand, within GFF3584 at 446.948 kb on - strand, within GFF3584 at 447.208 kb on + strand at 447.208 kb on + strand at 447.208 kb on + strand at 447.208 kb on + strand at 447.208 kb on + strand at 447.743 kb on + strand, within GFF3585 at 447.744 kb on - strand, within GFF3585 at 447.753 kb on + strand, within GFF3585 at 447.821 kb on + strand, within GFF3585 at 447.821 kb on + strand, within GFF3585 at 447.824 kb on + strand, within GFF3585 at 447.825 kb on - strand, within GFF3585 at 447.911 kb on + strand, within GFF3585 at 447.912 kb on - strand, within GFF3585 at 447.935 kb on + strand, within GFF3585 at 447.935 kb on + strand, within GFF3585 at 447.935 kb on + strand, within GFF3585 at 447.936 kb on - strand, within GFF3585 at 447.936 kb on - strand, within GFF3585 at 448.199 kb on + strand, within GFF3585 at 448.199 kb on + strand, within GFF3585 at 448.200 kb on - strand, within GFF3585 at 448.200 kb on - strand, within GFF3585 at 448.498 kb on + strand at 448.998 kb on - strand, within GFF3587 at 449.253 kb on - strand at 449.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 446,558 - GFF3584 0.47 -0.1 446,830 + GFF3584 0.72 +0.1 446,947 + GFF3584 0.82 -0.1 446,947 + GFF3584 0.82 -0.4 446,947 + GFF3584 0.82 +0.6 446,947 + GFF3584 0.82 +0.8 446,948 - GFF3584 0.83 -0.9 446,948 - GFF3584 0.83 -0.4 446,948 - GFF3584 0.83 -0.1 446,948 - GFF3584 0.83 +0.1 447,208 + +0.3 447,208 + -0.6 447,208 + +0.1 447,208 + +0.7 447,208 + +0.1 447,743 + GFF3585 0.36 -0.6 447,744 - GFF3585 0.36 -0.3 447,753 + GFF3585 0.37 +1.7 447,821 + GFF3585 0.44 +0.2 447,821 + GFF3585 0.44 -0.6 447,824 + GFF3585 0.44 -0.1 447,825 - GFF3585 0.44 +0.8 447,911 + GFF3585 0.52 -1.1 447,912 - GFF3585 0.52 -0.2 447,935 + GFF3585 0.54 -0.0 447,935 + GFF3585 0.54 +0.7 447,935 + GFF3585 0.54 +0.3 447,936 - GFF3585 0.55 -0.4 447,936 - GFF3585 0.55 +0.0 448,199 + GFF3585 0.80 -0.3 448,199 + GFF3585 0.80 +1.1 448,200 - GFF3585 0.80 -0.9 448,200 - GFF3585 0.80 -0.9 448,498 + +0.1 448,998 - GFF3587 0.46 +0.1 449,253 - -0.3 449,253 - +0.1
Or see this region's nucleotide sequence