Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF356 and GFF357 overlap by 4 nucleotides GFF357 and GFF358 are separated by 205 nucleotides GFF358 and GFF359 are separated by 93 nucleotides
GFF356 - hypothetical protein, at 364,549 to 365,964
GFF356
GFF357 - putative xanthine dehydrogenase subunit D, at 365,961 to 368,255
GFF357
GFF358 - hypothetical protein, at 368,461 to 369,030
GFF358
GFF359 - hypothetical protein, at 369,124 to 371,043
GFF359
Position (kb) 365
366
367
368
369 Strain fitness (log2 ratio) -1
0
1
2 at 365.009 kb on + strand, within GFF356 at 365.010 kb on - strand, within GFF356 at 365.010 kb on - strand, within GFF356 at 365.208 kb on + strand, within GFF356 at 365.208 kb on + strand, within GFF356 at 365.209 kb on - strand, within GFF356 at 365.314 kb on + strand, within GFF356 at 365.315 kb on - strand, within GFF356 at 365.315 kb on - strand, within GFF356 at 365.442 kb on - strand, within GFF356 at 365.960 kb on + strand at 365.961 kb on - strand at 365.961 kb on - strand at 366.030 kb on + strand at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.322 kb on - strand, within GFF357 at 366.322 kb on - strand, within GFF357 at 366.361 kb on - strand, within GFF357 at 366.361 kb on - strand, within GFF357 at 366.540 kb on + strand, within GFF357 at 366.541 kb on - strand, within GFF357 at 366.918 kb on + strand, within GFF357 at 366.919 kb on - strand, within GFF357 at 366.919 kb on - strand, within GFF357 at 366.919 kb on - strand, within GFF357 at 367.092 kb on + strand, within GFF357 at 367.122 kb on + strand, within GFF357 at 367.123 kb on - strand, within GFF357 at 367.330 kb on - strand, within GFF357 at 367.330 kb on - strand, within GFF357 at 367.331 kb on + strand, within GFF357 at 367.331 kb on + strand, within GFF357 at 367.332 kb on - strand, within GFF357 at 367.714 kb on - strand, within GFF357 at 367.767 kb on + strand, within GFF357 at 367.767 kb on + strand, within GFF357 at 367.768 kb on - strand, within GFF357 at 367.773 kb on + strand, within GFF357 at 367.773 kb on + strand, within GFF357 at 367.774 kb on - strand, within GFF357 at 367.774 kb on - strand, within GFF357 at 367.774 kb on - strand, within GFF357 at 367.779 kb on + strand, within GFF357 at 367.779 kb on + strand, within GFF357 at 367.780 kb on - strand, within GFF357 at 367.780 kb on - strand, within GFF357 at 367.995 kb on + strand, within GFF357 at 367.995 kb on + strand, within GFF357 at 367.996 kb on - strand, within GFF357 at 367.996 kb on - strand, within GFF357 at 367.996 kb on - strand, within GFF357 at 368.294 kb on - strand at 368.312 kb on + strand at 368.312 kb on + strand at 368.455 kb on + strand at 368.456 kb on - strand at 368.456 kb on - strand at 368.456 kb on - strand at 369.029 kb on + strand at 369.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 365,009 + GFF356 0.32 -0.7 365,010 - GFF356 0.33 +0.2 365,010 - GFF356 0.33 +0.0 365,208 + GFF356 0.47 -1.4 365,208 + GFF356 0.47 +0.3 365,209 - GFF356 0.47 +1.0 365,314 + GFF356 0.54 +0.2 365,315 - GFF356 0.54 +0.2 365,315 - GFF356 0.54 +2.6 365,442 - GFF356 0.63 -0.7 365,960 + -0.5 365,961 - -1.3 365,961 - +0.8 366,030 + +0.5 366,240 + GFF357 0.12 +0.8 366,240 + GFF357 0.12 -0.1 366,240 + GFF357 0.12 +0.3 366,240 + GFF357 0.12 +0.5 366,240 + GFF357 0.12 +0.1 366,240 + GFF357 0.12 +0.2 366,240 + GFF357 0.12 -1.0 366,240 + GFF357 0.12 -0.4 366,241 - GFF357 0.12 -0.5 366,241 - GFF357 0.12 +0.3 366,241 - GFF357 0.12 -0.6 366,241 - GFF357 0.12 +0.0 366,241 - GFF357 0.12 -0.7 366,322 - GFF357 0.16 -0.0 366,322 - GFF357 0.16 +0.0 366,361 - GFF357 0.17 -1.0 366,361 - GFF357 0.17 -0.1 366,540 + GFF357 0.25 -0.1 366,541 - GFF357 0.25 +0.4 366,918 + GFF357 0.42 -0.2 366,919 - GFF357 0.42 -0.2 366,919 - GFF357 0.42 +0.0 366,919 - GFF357 0.42 -0.4 367,092 + GFF357 0.49 -0.0 367,122 + GFF357 0.51 +0.1 367,123 - GFF357 0.51 +0.2 367,330 - GFF357 0.60 -0.3 367,330 - GFF357 0.60 +2.0 367,331 + GFF357 0.60 +0.3 367,331 + GFF357 0.60 +1.0 367,332 - GFF357 0.60 -1.1 367,714 - GFF357 0.76 +0.3 367,767 + GFF357 0.79 -0.0 367,767 + GFF357 0.79 +0.3 367,768 - GFF357 0.79 +0.2 367,773 + GFF357 0.79 -0.3 367,773 + GFF357 0.79 +1.9 367,774 - GFF357 0.79 -1.3 367,774 - GFF357 0.79 -0.1 367,774 - GFF357 0.79 +0.7 367,779 + GFF357 0.79 -0.0 367,779 + GFF357 0.79 -0.1 367,780 - GFF357 0.79 -0.1 367,780 - GFF357 0.79 -0.0 367,995 + GFF357 0.89 -0.4 367,995 + GFF357 0.89 +0.4 367,996 - GFF357 0.89 -0.3 367,996 - GFF357 0.89 -0.3 367,996 - GFF357 0.89 -0.1 368,294 - -0.5 368,312 + -0.2 368,312 + -0.3 368,455 + +1.5 368,456 - +0.6 368,456 - -0.1 368,456 - +0.3 369,029 + +1.0 369,052 + +0.2
Or see this region's nucleotide sequence