Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3566 and GFF3567 are separated by 106 nucleotides GFF3567 and GFF3568 are separated by 10 nucleotides GFF3568 and GFF3569 are separated by 16 nucleotides
GFF3566 - ATP-dependent DNA helicase PcrA, at 424,763 to 427,177
GFF3566
GFF3567 - hypothetical protein, at 427,284 to 428,558
GFF3567
GFF3568 - Release factor glutamine methyltransferase, at 428,569 to 429,480
GFF3568
GFF3569 - hypothetical protein, at 429,497 to 429,691
GFF3569
Position (kb) 427
428
429 Strain fitness (log2 ratio) -1
0
1 at 426.803 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.852 kb on - strand, within GFF3566 at 426.852 kb on - strand, within GFF3566 at 427.254 kb on - strand at 427.440 kb on + strand, within GFF3567 at 427.440 kb on + strand, within GFF3567 at 427.444 kb on - strand, within GFF3567 at 427.444 kb on - strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.743 kb on + strand, within GFF3567 at 427.744 kb on - strand, within GFF3567 at 427.920 kb on + strand, within GFF3567 at 427.920 kb on + strand, within GFF3567 at 427.921 kb on - strand, within GFF3567 at 427.942 kb on - strand, within GFF3567 at 427.942 kb on - strand, within GFF3567 at 428.014 kb on - strand, within GFF3567 at 428.025 kb on + strand, within GFF3567 at 428.026 kb on - strand, within GFF3567 at 428.173 kb on - strand, within GFF3567 at 428.280 kb on + strand, within GFF3567 at 428.734 kb on + strand, within GFF3568 at 428.735 kb on - strand, within GFF3568 at 428.735 kb on - strand, within GFF3568 at 429.248 kb on - strand, within GFF3568 at 429.385 kb on + strand, within GFF3568 at 429.423 kb on + strand at 429.423 kb on + strand at 429.531 kb on + strand, within GFF3569 at 429.532 kb on - strand, within GFF3569
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 426,803 + GFF3566 0.84 -0.2 426,851 + GFF3566 0.86 +0.2 426,851 + GFF3566 0.86 -0.1 426,851 + GFF3566 0.86 -0.6 426,852 - GFF3566 0.87 -0.1 426,852 - GFF3566 0.87 +0.7 427,254 - -0.3 427,440 + GFF3567 0.12 +0.2 427,440 + GFF3567 0.12 -1.3 427,444 - GFF3567 0.13 -0.2 427,444 - GFF3567 0.13 -0.6 427,566 + GFF3567 0.22 -0.5 427,566 + GFF3567 0.22 +0.3 427,566 + GFF3567 0.22 -0.6 427,566 + GFF3567 0.22 -0.6 427,567 - GFF3567 0.22 +0.0 427,567 - GFF3567 0.22 +0.2 427,567 - GFF3567 0.22 -0.3 427,743 + GFF3567 0.36 -0.0 427,744 - GFF3567 0.36 +0.7 427,920 + GFF3567 0.50 -0.0 427,920 + GFF3567 0.50 -0.0 427,921 - GFF3567 0.50 -0.2 427,942 - GFF3567 0.52 +0.3 427,942 - GFF3567 0.52 +0.6 428,014 - GFF3567 0.57 +0.0 428,025 + GFF3567 0.58 -0.7 428,026 - GFF3567 0.58 +1.0 428,173 - GFF3567 0.70 +0.6 428,280 + GFF3567 0.78 -0.6 428,734 + GFF3568 0.18 -0.7 428,735 - GFF3568 0.18 -0.1 428,735 - GFF3568 0.18 +0.3 429,248 - GFF3568 0.74 +0.0 429,385 + GFF3568 0.89 +0.5 429,423 + +0.1 429,423 + -0.4 429,531 + GFF3569 0.17 -0.2 429,532 - GFF3569 0.18 +0.2
Or see this region's nucleotide sequence